CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70521
CDX78539
CDY67732
CDY70634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11550.1	CDX70521	AT5G13810.1	21798944
AT5G11550.1	CDX78539	AT5G13810.1	21798944
AT5G11550.1	CDY67732	AT5G13810.1	21798944
AT5G11550.1	CDY70634	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69749	Canola	plastid	97.37	97.37
CDX85708	Canola	plastid	89.8	88.64
CDX91209	Canola	plastid	90.13	88.39
AT5G11550.1	Thale cress	plastid	90.46	87.58
CDX78430	Canola	mitochondrion	45.72	76.8
KRH52713	Soybean	mitochondrion, plastid	53.62	53.09
KRH62041	Soybean	plastid	47.7	50.52
PGSC0003DMT400047758	Potato	cytosol	33.55	50.25
VIT_04s0008g03630.t01	Wine grape	plastid	54.93	48.55
Solyc11g071240.1.1	Tomato	plastid	50.0	45.51
GSMUA_Achr4P15230_001	Banana	plastid	44.74	44.59
GSMUA_Achr7P25140_001	Banana	plastid	49.34	42.73
Zm00001d009530_P001	Maize	plastid	42.11	36.16
Zm00001d038979_P001	Maize	plastid	41.12	36.13
EES19935	Sorghum	plastid	41.78	34.99
TraesCS1D01G398100.1	Wheat	cytosol, plastid	40.79	34.93
Os05t0559350-00	Rice	plastid	41.12	34.63
TraesCS1B01G418000.1	Wheat	mitochondrion, plastid	40.79	34.35
HORVU1Hr1G086020.1	Barley	cytosol, plastid	40.79	33.97
TraesCS1A01G389900.1	Wheat	plastid	40.13	33.61

Protein Annotations

EnsemblPlants:CDY68531	EnsemblPlantsGene:GSBRNA2T00075384001	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-type_fold	PANTHER:PTHR22849
PANTHER:PTHR22849:SF35	ProteinID:CDY68531	ProteinID:CDY68531.1	SEG:seg	SUPFAM:SSF48371	UniParc:UPI0004EE0453
UniProt:A0A078JSA7	MapMan:35.2	:	:	:	:

Description

BnaCnng59400DBnaCnng59400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JSA7]

Coordinates

chrLK037494:-:1467..2544

Molecular Weight (calculated)

32139.8 Da

IEP (calculated)

8.498

GRAVY (calculated)

-0.044

Length

304 amino acids

Sequence
(BLAST)

001: MMKANQKAKP HAPPRPLFSC GFFRRCTQYV LSPTSPHRKP TTTPSSSSSS STSTSQSFTQ WRFPHHADQT PSTVTLPPTP PPPPPLPVAT TLQETFQIAE
101: LHLASVSESD KLLALQLLER VVVPDPPSDP TCPPGLMRGL VSCLRSNSIV TAKYATKILL ALCLAEGNRH VAVEAGAARA VVETAAGLEI SAVERALAAL
201: ELMCTTAEGA AEVRGHAMTV PAMVAVMARL AGRGRENAIS ILAVVYGRGG VDGEEIAVAP AEEVARAVAL ALEGECTARG RRKAAHLLKT LEEYGRLDLS
301: KNGS

Best Arabidopsis Sequence Match ( AT5G11550.1 )
(BLAST)

001: MMKANQKPKP HAPPRPLFSC GFFRRCTQSV LSPTSPHQQQ PRRKATTTSS SSSSSSTSTS QSFTQWRFPH HLDQTPSTAP PPPHPPPPPP PLPVTTTLQE
101: TFQIAELHLT SVSESDKLLA LQLLERVVVP DPPSDPTCPP GLMRGLVSCL RSNNKIVTAK YVTKILLALC LAEGNRHVAV EAGAARAVVE TAAGLEISAV
201: ERALAALELM CTTAEGAAEV RAHAMTVPAM VAVMARLAGR GREYAISILS VVYGKGGEGG DSGEEIAVAP AEEVARAVAL ALEGECTARG KRKGAQLLKT
301: LEEYGRLDLS QNGT

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.