Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023329.1-P | Field mustard | mitochondrion | 50.32 | 93.49 |
| CDX91209 | Canola | plastid | 90.45 | 91.61 |
| CDX85708 | Canola | plastid | 89.49 | 91.23 |
| CDX69749 | Canola | plastid | 88.22 | 91.12 |
| Bra008954.1-P | Field mustard | plastid | 87.9 | 90.79 |
| CDY68531 | Canola | plastid | 87.58 | 90.46 |
| CDX78430 | Canola | mitochondrion | 47.77 | 82.87 |
| KRH52713 | Soybean | mitochondrion, plastid | 52.55 | 53.75 |
| KRH62041 | Soybean | plastid | 46.18 | 50.52 |
| PGSC0003DMT400047758 | Potato | cytosol | 32.48 | 50.25 |
| VIT_04s0008g03630.t01 | Wine grape | plastid | 54.78 | 50.0 |
| GSMUA_Achr4P15230_001 | Banana | plastid | 45.22 | 46.56 |
| Solyc11g071240.1.1 | Tomato | plastid | 49.36 | 46.41 |
| GSMUA_Achr7P25140_001 | Banana | plastid | 47.77 | 42.73 |
| Zm00001d009530_P001 | Maize | plastid | 40.13 | 35.59 |
| Zm00001d038979_P001 | Maize | plastid | 38.85 | 35.26 |
| Os05t0559350-00 | Rice | plastid | 39.81 | 34.63 |
| TraesCS1D01G398100.1 | Wheat | cytosol, plastid | 38.53 | 34.08 |
| EES19935 | Sorghum | plastid | 39.17 | 33.88 |
| TraesCS1B01G418000.1 | Wheat | mitochondrion, plastid | 38.85 | 33.8 |
| HORVU1Hr1G086020.1 | Barley | cytosol, plastid | 39.17 | 33.7 |
| TraesCS1A01G389900.1 | Wheat | plastid | 38.22 | 33.06 |
Protein Annotations
| MapMan:35.2 | EntrezGene:831027 | ProteinID:AED91694.1 | InterPro:ARM-type_fold | ArrayExpress:AT5G11550 | EnsemblPlantsGene:AT5G11550 |
| RefSeq:AT5G11550 | TAIR:AT5G11550 | RefSeq:AT5G11550-TAIR-G | EnsemblPlants:AT5G11550.1 | TAIR:AT5G11550.1 | EMBL:BT002981 |
| EMBL:BT004426 | ProteinID:CAB87715.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008150 | RefSeq:NP_196716.1 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF35 | UniProt:Q9LYD7 |
| SUPFAM:SSF48371 | UniParc:UPI000000BE72 | SEG:seg | : | : | : |
Description
ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYD7]
Coordinates
chr5:-:3707961..3709403
Molecular Weight (calculated)
33307.1 Da
IEP (calculated)
8.496
GRAVY (calculated)
-0.182
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKANQKPKP HAPPRPLFSC GFFRRCTQSV LSPTSPHQQQ PRRKATTTSS SSSSSSTSTS QSFTQWRFPH HLDQTPSTAP PPPHPPPPPP PLPVTTTLQE
101: TFQIAELHLT SVSESDKLLA LQLLERVVVP DPPSDPTCPP GLMRGLVSCL RSNNKIVTAK YVTKILLALC LAEGNRHVAV EAGAARAVVE TAAGLEISAV
201: ERALAALELM CTTAEGAAEV RAHAMTVPAM VAVMARLAGR GREYAISILS VVYGKGGEGG DSGEEIAVAP AEEVARAVAL ALEGECTARG KRKGAQLLKT
301: LEEYGRLDLS QNGT
101: TFQIAELHLT SVSESDKLLA LQLLERVVVP DPPSDPTCPP GLMRGLVSCL RSNNKIVTAK YVTKILLALC LAEGNRHVAV EAGAARAVVE TAAGLEISAV
201: ERALAALELM CTTAEGAAEV RAHAMTVPAM VAVMARLAGR GREYAISILS VVYGKGGEGG DSGEEIAVAP AEEVARAVAL ALEGECTARG KRKGAQLLKT
301: LEEYGRLDLS QNGT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.