CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 4
extracellular 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH13399
KRH20755
KRH62918

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11550.1	KRH13399	AT5G13810.1	21798944
AT5G11550.1	KRH20755	AT5G13810.1	21798944
AT5G11550.1	KRH62918	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62041	Soybean	plastid	77.2	82.58
Bra023329.1-P	Field mustard	mitochondrion	32.57	59.17
PGSC0003DMT400047758	Potato	cytosol	35.5	53.69
CDX69749	Canola	plastid	53.09	53.62
CDY68531	Canola	plastid	53.09	53.62
Bra008954.1-P	Field mustard	plastid	52.77	53.29
CDX85708	Canola	plastid	53.09	52.92
CDX91209	Canola	plastid	53.42	52.9
AT5G11550.1	Thale cress	plastid	53.75	52.55
Solyc11g071240.1.1	Tomato	plastid	55.05	50.6
CDX78430	Canola	mitochondrion	28.66	48.62
VIT_04s0008g03630.t01	Wine grape	plastid	53.75	47.97
GSMUA_Achr4P15230_001	Banana	plastid	45.28	45.57
GSMUA_Achr7P25140_001	Banana	plastid	45.28	39.6
Zm00001d009530_P001	Maize	plastid	41.04	35.59
Zm00001d038979_P001	Maize	plastid	38.76	34.39
EES19935	Sorghum	plastid	39.09	33.06
Os05t0559350-00	Rice	plastid	38.11	32.41
TraesCS1D01G398100.1	Wheat	cytosol, plastid	37.46	32.39
HORVU1Hr1G086020.1	Barley	cytosol, plastid	38.44	32.33
TraesCS1A01G389900.1	Wheat	plastid	38.11	32.23
TraesCS1B01G418000.1	Wheat	mitochondrion, plastid	36.48	31.02

Protein Annotations

EMBL:ACUP02003428	EnsemblPlants:KRH52713	EnsemblPlantsGene:GLYMA_06G083600	EntrezGene:100814020	GO:GO:0003674	GO:GO:0005488
InterPro:ARM-type_fold	PANTHER:PTHR22849	PANTHER:PTHR22849:SF35	ProteinID:KRH52713	ProteinID:KRH52713.1	SEG:seg
SUPFAM:SSF48371	UniParc:UPI000233A311	UniProt:I1K9B7	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr6:-:6436786..6438312

Molecular Weight (calculated)

32696.0 Da

IEP (calculated)

6.594

GRAVY (calculated)

-0.239

Length

307 amino acids

Sequence
(BLAST)

001: MKTHQQPKLK TQLFSCGFFR HCAQTVLSPT GTTPPLPQTP PGFQCESSTS SSSSSTTSQS FTQWRFSPPT PTTTTNSNLI QTNTNPPSPP PPPQIHNLQE
101: LFHILELQLT TDPTSVLNLL ERSLVPNPPQ NQPPCPPNLM RALTANLATA KPATKILFAL CLSDANRRVA VETGAVSAVV EAAPDLDGAP AERALAALEL
201: MCTLPEGAEE LRAHALAVPV MVTMMAKTAA RGKEYAIGVL AVVYGSVGGG EEHHTAPPEE VARAVELALQ GECSARGRRK GAQLLKTLQQ LSQAELEAAE
301: SHLHEAN

Best Arabidopsis Sequence Match ( AT5G11550.1 )
(BLAST)

001: MMKANQKPKP HAPPRPLFSC GFFRRCTQSV LSPTSPHQQQ PRRKATTTSS SSSSSSTSTS QSFTQWRFPH HLDQTPSTAP PPPHPPPPPP PLPVTTTLQE
101: TFQIAELHLT SVSESDKLLA LQLLERVVVP DPPSDPTCPP GLMRGLVSCL RSNNKIVTAK YVTKILLALC LAEGNRHVAV EAGAARAVVE TAAGLEISAV
201: ERALAALELM CTTAEGAAEV RAHAMTVPAM VAVMARLAGR GREYAISILS VVYGKGGEGG DSGEEIAVAP AEEVARAVAL ALEGECTARG KRKGAQLLKT
301: LEEYGRLDLS QNGT

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.