Factsheet for VIT_04s0008g03630.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_13s0019g00340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11550.1	VIT_13s0019g00340.t01	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023329.1-P	Field mustard	mitochondrion	29.36	59.76
PGSC0003DMT400047758	Potato	cytosol	34.01	57.64
CDX69749	Canola	plastid	48.84	55.26
Bra008954.1-P	Field mustard	plastid	48.55	54.93
CDY68531	Canola	plastid	48.55	54.93
AT5G11550.1	Thale cress	plastid	50.0	54.78
CDX85708	Canola	plastid	48.84	54.55
Solyc11g071240.1.1	Tomato	plastid	52.33	53.89
CDX91209	Canola	plastid	48.55	53.87
KRH52713	Soybean	mitochondrion, plastid	47.97	53.75
GSMUA_Achr4P15230_001	Banana	plastid	46.8	52.79
KRH62041	Soybean	plastid	42.15	50.52
GSMUA_Achr7P25140_001	Banana	plastid	51.16	50.14
CDX78430	Canola	mitochondrion	25.87	49.17
Zm00001d038979_P001	Maize	plastid	41.57	41.33
Zm00001d009530_P001	Maize	plastid	42.15	40.96
EES19935	Sorghum	plastid	42.73	40.5
Os05t0559350-00	Rice	plastid	41.86	39.89
TraesCS1D01G398100.1	Wheat	cytosol, plastid	40.41	39.15
TraesCS1A01G389900.1	Wheat	plastid	40.99	38.84
HORVU1Hr1G086020.1	Barley	cytosol, plastid	40.99	38.63
TraesCS1B01G418000.1	Wheat	mitochondrion, plastid	39.24	37.4

Protein Annotations

ArrayExpress:VIT_04s0008g03630	EMBL:FN595231	EnsemblPlants:VIT_04s0008g03630.t01	EnsemblPlantsGene:VIT_04s0008g03630	EntrezGene:100252675	EntrezGene:LOC100252675
PANTHER:PTHR22849	PANTHER:PTHR22849:SF35	ProteinID:CCB46711	ProteinID:CCB46711.1	RefSeq:XP_002281453	RefSeq:XP_002281453.1
SEG:seg	UniParc:UPI0001983134	UniProt:F6H3E7	wikigene:100252675	wikigene:LOC100252675	MapMan:35.2

Description

No Description!

Coordinates

chr4:+:2986074..2987248

Molecular Weight (calculated)

36149.4 Da

IEP (calculated)

6.503

GRAVY (calculated)

-0.206

Length

344 amino acids

Sequence
(BLAST)

001: MKTEHPKLKT TPRPLFSCGF FSHCTQSVIS PTTPNTPSLP LSSLPTPPPP PPPPPPSSHQ QSHPHPPPPP PHHPPPPPDS ESSSSSTSQS FTQWRFPLPN
101: SLILHHHQPP SQSHPSHTQI SPQTDHPPPS PPLIAVANLE ELFHVAELQL STGSDVEKLA ALQLLERSLV PAAGGGEEAC PAAVMRGVVG CLKDRAGARP
201: ATKVLLALCL AEGNRHVAVE AGAVAEVVEA MSEMEGAVAE RALAALELMC TVAEGAAELR AHALSVPMMI SMMESMAGRG KECAISILAV IYIGAGDQAP
301: PSEEVARAVA LALQGDCSAR GKRKGAQLLR ALQENGRLEL TQEG

Best Arabidopsis Sequence Match ( AT5G11550.1 )
(BLAST)

001: MMKANQKPKP HAPPRPLFSC GFFRRCTQSV LSPTSPHQQQ PRRKATTTSS SSSSSSTSTS QSFTQWRFPH HLDQTPSTAP PPPHPPPPPP PLPVTTTLQE
101: TFQIAELHLT SVSESDKLLA LQLLERVVVP DPPSDPTCPP GLMRGLVSCL RSNNKIVTAK YVTKILLALC LAEGNRHVAV EAGAARAVVE TAAGLEISAV
201: ERALAALELM CTTAEGAAEV RAHAMTVPAM VAVMARLAGR GREYAISILS VVYGKGGEGG DSGEEIAVAP AEEVARAVAL ALEGECTARG KRKGAQLLKT
301: LEEYGRLDLS QNGT

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.