Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g005270.1.1 | Tomato | cytosol | 43.19 | 58.42 |
| KRH13399 | Soybean | plastid | 56.03 | 53.93 |
| KRH20755 | Soybean | plastid | 56.81 | 53.87 |
| VIT_13s0019g00340.t01 | Wine grape | plastid | 56.03 | 53.73 |
| CDY67732 | Canola | plastid | 52.92 | 52.51 |
| AT5G13810.1 | Thale cress | plastid | 55.25 | 51.82 |
| CDY70634 | Canola | plastid | 53.7 | 51.69 |
| Bra008801.1-P | Field mustard | plastid | 53.31 | 51.31 |
| Solyc03g078380.1.1 | Tomato | cytosol | 51.36 | 50.57 |
| CDX78539 | Canola | cytosol, plastid | 51.36 | 50.38 |
| Bra006216.1-P | Field mustard | plastid | 50.97 | 49.62 |
| PGSC0003DMT400047487 | Potato | cytosol | 50.97 | 49.62 |
| CDX70521 | Canola | plastid | 51.36 | 49.25 |
| PGSC0003DMT400015465 | Potato | cytosol | 50.19 | 47.08 |
| KRH30192 | Soybean | plastid | 34.63 | 38.53 |
| KRH31178 | Soybean | plastid | 33.85 | 37.99 |
| KRG97693 | Soybean | plastid | 33.07 | 37.12 |
| KRG98239 | Soybean | plastid | 33.85 | 36.86 |
| KRH14919 | Soybean | plastid | 33.85 | 35.95 |
| KRH72724 | Soybean | plastid | 33.85 | 30.96 |
| KRG95123 | Soybean | plastid | 50.19 | 30.42 |
| KRH41800 | Soybean | cytosol | 31.52 | 30.0 |
| KRG96283 | Soybean | mitochondrion | 29.57 | 29.92 |
| KRH72143 | Soybean | mitochondrion | 30.35 | 29.55 |
| KRH73271 | Soybean | plastid | 34.24 | 29.24 |
| KRH68025 | Soybean | cytosol | 29.96 | 29.17 |
| KRH17081 | Soybean | plastid | 34.24 | 29.14 |
| KRH32876 | Soybean | cytosol | 31.13 | 28.99 |
| KRH66801 | Soybean | plastid | 33.07 | 22.67 |
| KRH60067 | Soybean | cytosol | 29.18 | 22.26 |
| KRG93517 | Soybean | cytosol | 33.07 | 19.45 |
| KRH40113 | Soybean | cytosol, mitochondrion | 33.85 | 19.0 |
| KRH34627 | Soybean | cytosol | 27.24 | 18.97 |
| KRH01158 | Soybean | cytosol | 33.85 | 18.75 |
| KRG92161 | Soybean | cytosol | 27.63 | 18.68 |
| KRH67928 | Soybean | cytosol | 31.13 | 17.47 |
Protein Annotations
| EntrezGene:100811108 | Gene3D:3.40.30.10 | MapMan:35.1 | EMBL:ACUP02002416 | EnsemblPlantsGene:GLYMA_04G141800 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009055 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0022900 | GO:GO:0045454 |
| GO:GO:0055114 | InterPro:Glutaredoxin | UniProt:I1JWF4 | InterPro:IPR002109 | EnsemblPlants:KRH62918 | ProteinID:KRH62918 |
| ProteinID:KRH62918.1 | PFAM:PF00462 | PFscan:PS51354 | PANTHER:PTHR10168 | PANTHER:PTHR10168:SF84 | SUPFAM:SSF52833 |
| InterPro:Thioredoxin-like_sf | UniParc:UPI000233A087 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:24035001..24036812
Molecular Weight (calculated)
29202.9 Da
IEP (calculated)
8.019
GRAVY (calculated)
-0.449
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRFPFFNRS NTIHSTKSES SQKPYLVHHH LHNLDRSGSV NRFYGSVDSM KSSIRGKMVK KLCTLFESSK KPLPEPESES ESFSSSKSRS KTDSDSCITI
101: LFRLPGTEDR IVVYLTSLRG IRRTFEDCNA VRMILKGFRV WVDERDVSMD LSYREELQHV LGEHHVALPQ VFIRGKYIGG ADVIKHLFES GDLAKMILEG
201: LPKLKPGFVC DNCGDARFVP CENCSGSRKV FDEDEGELKR CLECNENGLL RCPYCCS
101: LFRLPGTEDR IVVYLTSLRG IRRTFEDCNA VRMILKGFRV WVDERDVSMD LSYREELQHV LGEHHVALPQ VFIRGKYIGG ADVIKHLFES GDLAKMILEG
201: LPKLKPGFVC DNCGDARFVP CENCSGSRKV FDEDEGELKR CLECNENGLL RCPYCCS
001: MAGLEKNADF SGKTTKSATT TSFFNRSLTI HGRTVVDSGP KSHNLNPSLN RTTSITKFYT PVESMGTSLK GKVKNLCRLF ETSKPVKPAL AEIPQKQKSG
101: KSLLPESRIS PFSSLNNSVI RLPGTEDRIV VYFTSLRGIR RTYEDCYAVR MIFRGFRVWI DERDVSMDIA YRKELQIAMG EKSVSLPQVF IMGKYVGGAD
201: VIKSLFEIGE LAKILKEFPM RQPGFVCHCC GDIRFVPCSN CSGSKKLFDE DEDRVKRCPE CNENGLIRCP DCSS
101: KSLLPESRIS PFSSLNNSVI RLPGTEDRIV VYFTSLRGIR RTYEDCYAVR MIFRGFRVWI DERDVSMDIA YRKELQIAMG EKSVSLPQVF IMGKYVGGAD
201: VIKSLFEIGE LAKILKEFPM RQPGFVCHCC GDIRFVPCSN CSGSKKLFDE DEDRVKRCPE CNENGLIRCP DCSS
Arabidopsis Description
AT5g13810/MAC12_24 [Source:UniProtKB/TrEMBL;Acc:Q9FFZ0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.