CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
extracellular 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH06239
KRH47662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G58070.1	KRH06239	AT1G54060.1	21798944
AT1G58070.1	KRH47662	AT1G54060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0035g00790.t01	Wine grape	nucleus	44.59	49.28
Solyc01g103700.2.1	Tomato	nucleus	44.16	45.74
PGSC0003DMT400064073	Potato	nucleus	43.72	41.91
Bra027888.1-P	Field mustard	nucleus	41.13	39.75
GSMUA_Achr2P20680_001	Banana	nucleus	32.9	35.02
AT1G58070.1	Thale cress	nucleus	41.99	34.15
CDY68194	Canola	cytoskeleton, cytosol, nucleus	29.87	32.09
CDX91607	Canola	cytoskeleton, cytosol, nucleus	29.87	32.09
TraesCS4D01G097600.1	Wheat	nucleus	35.5	29.82
TraesCS4B01G101000.1	Wheat	nucleus	34.63	29.09
TraesCS4A01G215100.1	Wheat	nucleus	34.63	28.99
HORVU4Hr1G043740.1	Barley	nucleus	34.63	28.88
Os11t0195800-01	Rice	nucleus	35.5	28.08
Zm00001d007308_P001	Maize	cytosol, plastid	22.51	26.13
EES09471	Sorghum	nucleus, plastid	34.2	25.48
EES16770	Sorghum	nucleus	30.3	22.88
TraesCS5A01G119700.1	Wheat	plastid	29.87	22.62
TraesCS5B01G116200.1	Wheat	plastid	29.44	22.3
HORVU5Hr1G038070.1	Barley	nucleus	28.14	21.04
Zm00001d053139_P001	Maize	plastid	26.84	20.53
Os12t0182100-00	Rice	cytosol, plastid	25.97	18.24

Protein Annotations

EMBL:ACUP02007707	EnsemblPlants:KRH26326	EnsemblPlantsGene:GLYMA_12G167600	EntrezGene:100811983	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0009903	GO:GO:0009904
GO:GO:0009987	GO:GO:0016043	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF11	ProteinID:KRH26326
ProteinID:KRH26326.1	SEG:seg	UniParc:UPI0002949132	UniProt:I1LTD2	MapMan:20.2.3.3	:

Description

hypothetical protein

Coordinates

chr12:+:32244433..32245365

Molecular Weight (calculated)

25765.8 Da

IEP (calculated)

10.210

GRAVY (calculated)

-0.685

Length

231 amino acids

Sequence
(BLAST)

001: MILKYYLHPP SPKFFSSIPT MDFSSTVDTS RPFTSVKEAV AIFGERLLLG EIYSPIKRES SWRLSSPSPS PSSRPMKTDE ENNNNNNGQL ADIIKKLEAE
101: LEQTKVELKL LKERGSETEV ALATLNAELH KNMSKLAQAE ATAAGKAATT KTVRFEISED RKDGTVEKKK ESQSLSHMLS LGEKDHLFGG KKGKKQKQKQ
201: KPIIPLVGDL FFKRKSSSTT SHHNPLYASP F

Best Arabidopsis Sequence Match ( AT1G58070.1 )
(BLAST)

001: MDIEEMEGNN QVEEHHVDTS RPFSSVKEAV AIFGQRIMLP VQTHTMNSKS ASPIAASRSI NQNAKPRSPG LSQTVKLVIP TASPSISQTA KLVSPIASPS
101: ISQTASSSSS PWKQRSLLPP SPQGPKEEIM DVLKKLEAEI TETKTEVKML KERESETEVA LATLNAELHK NKSKIAKAEA DAAGKSAAAM TKSVSFKDTK
201: EKENGEDQRR KELMRKMQKE YPSLAQILDS NKGNRDGYFA NTKKTKKKKK PIIPLVGDFF FFKKKGSSPE ISGPLYTTSS TLHF

Arabidopsis Description

At1g58070 [Source:UniProtKB/TrEMBL;Acc:Q9C6F8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.