Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, cytoskeleton
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91607 | Canola | cytoskeleton, cytosol, nucleus | 100.0 | 100.0 |
| AT1G58070.1 | Thale cress | nucleus | 54.88 | 41.55 |
| VIT_12s0035g00790.t01 | Wine grape | nucleus | 32.56 | 33.49 |
| KRH26326 | Soybean | cytosol | 32.09 | 29.87 |
| Solyc01g103700.2.1 | Tomato | nucleus | 26.98 | 26.01 |
| PGSC0003DMT400064073 | Potato | nucleus | 27.91 | 24.9 |
| GSMUA_Achr2P20680_001 | Banana | nucleus | 24.19 | 23.96 |
| Os11t0195800-01 | Rice | nucleus | 26.51 | 19.52 |
| TraesCS4A01G215100.1 | Wheat | nucleus | 24.19 | 18.84 |
| TraesCS4D01G097600.1 | Wheat | nucleus | 23.72 | 18.55 |
| HORVU4Hr1G043740.1 | Barley | nucleus | 23.72 | 18.41 |
| EES09471 | Sorghum | nucleus, plastid | 26.51 | 18.39 |
| EES16770 | Sorghum | nucleus | 26.05 | 18.3 |
| TraesCS4B01G101000.1 | Wheat | nucleus | 23.26 | 18.18 |
| Zm00001d007308_P001 | Maize | cytosol, plastid | 16.74 | 18.09 |
| TraesCS5B01G116200.1 | Wheat | plastid | 21.4 | 15.08 |
| TraesCS5A01G119700.1 | Wheat | plastid | 20.93 | 14.75 |
| Os12t0182100-00 | Rice | cytosol, plastid | 22.33 | 14.59 |
| HORVU5Hr1G038070.1 | Barley | nucleus | 20.47 | 14.24 |
| Zm00001d053139_P001 | Maize | plastid | 15.81 | 11.26 |
Protein Annotations
| EnsemblPlants:CDY68194 | EnsemblPlantsGene:GSBRNA2T00070065001 | ncoils:Coil | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF11 | ProteinID:CDY68194 |
| ProteinID:CDY68194.1 | SEG:seg | UniParc:UPI0004EF0446 | UniProt:A0A078DRV8 | MapMan:20.2.3.3 | : |
Description
BnaC01g42980DBnaC01g42980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078DRV8]
Coordinates
chrLK036967:+:4995..5716
Molecular Weight (calculated)
24784.7 Da
IEP (calculated)
6.175
GRAVY (calculated)
-0.701
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: METEAMENNP VEQHHVDTSR SFSLVIEAVP TFGQRIMLPR KIHTLNSKPV SPIASPNISQ IAKPVSPKDE LMDVLKKLEA EITETKTEVR MLKERELETE
101: VSLATLDAEQ DKNISKMAKA EADAAGKSAD AMAKSVSFKE TKIKENGDEE RGKELVKRKQ NEYTHLLKYF ELRMIETYYI NYGELNIVKE KLIRLYQRLR
201: KEDDTTAESR YYLFP
101: VSLATLDAEQ DKNISKMAKA EADAAGKSAD AMAKSVSFKE TKIKENGDEE RGKELVKRKQ NEYTHLLKYF ELRMIETYYI NYGELNIVKE KLIRLYQRLR
201: KEDDTTAESR YYLFP
001: MDIEEMEGNN QVEEHHVDTS RPFSSVKEAV AIFGQRIMLP VQTHTMNSKS ASPIAASRSI NQNAKPRSPG LSQTVKLVIP TASPSISQTA KLVSPIASPS
101: ISQTASSSSS PWKQRSLLPP SPQGPKEEIM DVLKKLEAEI TETKTEVKML KERESETEVA LATLNAELHK NKSKIAKAEA DAAGKSAAAM TKSVSFKDTK
201: EKENGEDQRR KELMRKMQKE YPSLAQILDS NKGNRDGYFA NTKKTKKKKK PIIPLVGDFF FFKKKGSSPE ISGPLYTTSS TLHF
101: ISQTASSSSS PWKQRSLLPP SPQGPKEEIM DVLKKLEAEI TETKTEVKML KERESETEVA LATLNAELHK NKSKIAKAEA DAAGKSAAAM TKSVSFKDTK
201: EKENGEDQRR KELMRKMQKE YPSLAQILDS NKGNRDGYFA NTKKTKKKKK PIIPLVGDFF FFKKKGSSPE ISGPLYTTSS TLHF
Arabidopsis Description
At1g58070 [Source:UniProtKB/TrEMBL;Acc:Q9C6F8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.