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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • golgi 1
  • mitochondrion 1
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:golgi, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:golgi
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70995
CDX84933
CDX88803
CDX92368
CDY03907
CDY09128
CDY15722
CDY27605
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G63120.1 CDX84933 AT1G27300.1 21798944
AT1G63120.1 CDY03907 AT1G27300.1 21798944
AT1G63120.1 CDY15722 AT1G27300.1 21798944
AT1G63120.1 CDY27605 AT1G27300.1 21798944
AT1G63120.1 CDX70995 AT5G22290.1 21798944
AT1G63120.1 CDX88803 AT5G22290.1 21798944
AT1G63120.1 CDX92368 AT5G22290.1 21798944
AT1G63120.1 CDY09128 AT5G22290.1 21798944
AT1G63120.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra026997.1-P Field mustard cytosol, golgi, plasma membrane 98.43 98.43
CDY45976 Canola plasma membrane 98.43 98.43
CDY47350 Canola plasma membrane 89.34 90.48
AT1G63120.1 Thale cress cytosol, golgi, plasma membrane 89.66 90.22
CDY49197 Canola plasma membrane 89.34 88.78
VIT_02s0025g04130.t01 Wine grape cytosol, plasma membrane, vacuole 68.97 67.07
CDY66606 Canola plasma membrane 63.01 66.12
Os09t0525900-01 Rice plasma membrane 64.58 63.78
PGSC0003DMT400007890 Potato plasma membrane 65.83 63.64
TraesCS5D01G320400.1 Wheat plasma membrane 63.32 63.12
Zm00001d021231_P002 Maize plasma membrane 63.95 62.96
HORVU5Hr1G080690.2 Barley plasma membrane 63.32 62.93
Solyc08g080500.2.1 Tomato cytosol, golgi, plasma membrane 65.52 62.76
Zm00001d052734_P002 Maize plasma membrane 63.32 62.73
TraesCS5A01G314000.1 Wheat plasma membrane 63.32 62.73
TraesCS5B01G314900.1 Wheat plasma membrane 63.32 62.54
EER99221 Sorghum cytosol, peroxisome, plasma membrane 63.32 62.15
Zm00001d006179_P002 Maize plasma membrane 63.32 61.77
Os08t0546700-01 Rice plasma membrane 62.38 61.61
Os10t0521900-01 Rice plasma membrane 63.64 61.14
Os03t0116400-01 Rice cytosol, peroxisome, plasma membrane 61.13 60.0
TraesCS1A01G188900.1 Wheat plasma membrane 61.44 59.94
TraesCS4A01G179600.1 Wheat plasma membrane 36.05 59.9
TraesCS1D01G187500.1 Wheat plasma membrane 60.5 59.75
Zm00001d029668_P001 Maize plasma membrane 62.38 59.58
Zm00001d029667_P001 Maize plasma membrane 62.38 59.58
CDY41251 Canola plasma membrane 57.99 59.11
CDX98992 Canola plasma membrane 62.7 58.82
CDY53134 Canola plasma membrane 57.68 58.6
TraesCS1B01G196600.1 Wheat plasma membrane 59.87 58.59
HORVU7Hr1G056630.1 Barley plasma membrane 59.87 58.59
TraesCS7A01G269900.1 Wheat plasma membrane 59.25 58.51
EER94630 Sorghum cytosol, golgi, plasma membrane 61.44 58.51
TraesCS7B01G168100.1 Wheat plasma membrane 59.56 57.93
TraesCS7D01G270400.1 Wheat plasma membrane 59.56 57.93
CDX70021 Canola plasma membrane 63.01 57.93
HORVU1Hr1G048610.3 Barley plasma membrane 58.93 57.85
TraesCS4B01G356600.1 Wheat plasma membrane 60.5 57.78
CDY60266 Canola plasma membrane 64.58 57.54
TraesCS5A01G526000.1 Wheat plasma membrane 59.87 57.53
TraesCS4D01G350300.1 Wheat plasma membrane 59.56 57.06
Zm00001d027355_P001 Maize plasma membrane 56.74 56.21
EER95642 Sorghum cytosol, golgi, plasma membrane 57.37 56.13
EES11282 Sorghum cytosol 59.56 55.88
CDX70020 Canola mitochondrion, plasma membrane 56.74 55.86
CDX78286 Canola plasma membrane 56.11 55.08
Zm00001d002632_P001 Maize plasma membrane 58.62 55.0
CDX81043 Canola plasma membrane 56.11 54.91
TraesCS2A01G401000.1 Wheat plasma membrane 57.99 54.25
TraesCS2B01G419100.1 Wheat plasma membrane 57.37 54.14
TraesCS2D01G398500.1 Wheat plasma membrane 57.37 53.98
Os04t0569300-01 Rice cytosol 56.74 52.92
CDY47879 Canola plasma membrane 61.13 51.18
CDY39528 Canola plasma membrane 61.44 51.17
CDX98993 Canola cytosol 50.16 50.31
HORVU4Hr1G086150.3 Barley plastid 59.25 48.71
CDX87921 Canola plasma membrane 31.97 48.57
CDX78204 Canola plasma membrane 57.05 46.55
CDY65838 Canola plasma membrane 57.05 46.55
CDY60552 Canola plasma membrane 45.45 46.47
CDY40148 Canola plasma membrane 45.77 46.35
CDY65908 Canola plasma membrane 45.45 46.03
CDX73525 Canola plasma membrane 56.43 44.78
CDX76189 Canola cytosol, peroxisome, plasma membrane 54.86 44.76
CDY30844 Canola cytosol, peroxisome, plasma membrane 54.86 44.76
HORVU2Hr1G095170.6 Barley mitochondrion 48.28 41.73
HORVU3Hr1G029090.1 Barley plastid 18.5 38.82
HORVU0Hr1G006330.1 Barley plastid 18.5 38.82
CDX87497 Canola plasma membrane 40.13 33.16
CDX88394 Canola plasma membrane 39.19 32.22
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6GO:A0A078JLD9UniProt:A0A078JLD9EnsemblPlants:CDY67235ProteinID:CDY67235
ProteinID:CDY67235.1GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575GO:GO:0006508
GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0016020GO:GO:0016021GO:GO:0016787
GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00060482001InterPro:IPR035952PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF63
InterPro:Peptidase_S54_rhomboidInterPro:Peptidase_S54_rhomboid_domInterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixUniParc:UPI0004EF09C2
SEG:seg:::::
Description
BnaCnng54050DRhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078JLD9]
Coordinates
chrLK035891:-:4952..6800
Molecular Weight (calculated)
35615.0 Da
IEP (calculated)
9.798
GRAVY (calculated)
0.361
Length
319 amino acids
Sequence
(BLAST)
001: MANRDVERGG KQNREVHNNN NYFYDESSRD THWTPWLVPA IVVANLAVFI AVMFVNDCPK KINGPNKACV ARFLGRFSFQ PLRENPLFGP SSSTLERMGA
101: LEWRKVVHEH HGWRLVTCMW LHAGIIHLLT NMLSLIFIGI RLEQQFGFIR VGLIYLVSGF GGSILSSLFL QESISVGASG ALFGLLGAML SELLINWTIY
201: ANKAAALVTL LFIIAINLGL GLLPRVDNFA HIGGFLTGLC LGFVLLVRPQ YGWEASRTNT SVTKRKHSMY QYVLFVVAAV LLVVGLTVGL VMLFKGENGN
301: KHCKWCHRLS CFPTSKWTC
Best Arabidopsis Sequence Match ( AT1G63120.1 )
(BLAST)
001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
Arabidopsis Description
RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.