Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87497 | Canola | plasma membrane | 96.39 | 96.89 |
| AT1G77860.2 | Thale cress | nucleus, peroxisome, plasma membrane | 84.02 | 84.68 |
| KRH64762 | Soybean | plasma membrane | 49.74 | 52.45 |
| KRH53148 | Soybean | plasma membrane | 48.97 | 50.94 |
| Solyc11g013320.1.1 | Tomato | plasma membrane | 47.68 | 48.05 |
| VIT_18s0001g04400.t01 | Wine grape | plasma membrane | 41.75 | 47.37 |
| PGSC0003DMT400016755 | Potato | cytosol | 43.56 | 44.01 |
| CDY67235 | Canola | plasma membrane | 32.22 | 39.19 |
| CDY47350 | Canola | plasma membrane | 31.7 | 39.05 |
| CDY45976 | Canola | plasma membrane | 31.96 | 38.87 |
| CDY41251 | Canola | plasma membrane | 30.67 | 38.02 |
| CDY49197 | Canola | plasma membrane | 31.44 | 38.01 |
| CDY53134 | Canola | plasma membrane | 30.67 | 37.9 |
| CDY66606 | Canola | plasma membrane | 29.64 | 37.83 |
| CDY47879 | Canola | plasma membrane | 37.11 | 37.8 |
| CDX78286 | Canola | plasma membrane | 31.19 | 37.23 |
| CDX87921 | Canola | plasma membrane | 20.1 | 37.14 |
| CDY39528 | Canola | plasma membrane | 36.6 | 37.08 |
| CDX81043 | Canola | plasma membrane | 30.93 | 36.81 |
| CDX98992 | Canola | plasma membrane | 32.22 | 36.76 |
| CDX70021 | Canola | plasma membrane | 32.47 | 36.31 |
| CDY60552 | Canola | plasma membrane | 29.12 | 36.22 |
| CDX70020 | Canola | mitochondrion, plasma membrane | 29.9 | 35.8 |
| CDX76189 | Canola | cytosol, peroxisome, plasma membrane | 35.05 | 34.78 |
| CDY30844 | Canola | cytosol, peroxisome, plasma membrane | 34.79 | 34.53 |
| CDY65908 | Canola | plasma membrane | 27.84 | 34.29 |
| CDY65838 | Canola | plasma membrane | 34.28 | 34.02 |
| CDX78204 | Canola | plasma membrane | 34.28 | 34.02 |
| CDY40148 | Canola | plasma membrane | 27.58 | 33.97 |
| CDY60266 | Canola | plasma membrane | 30.15 | 32.68 |
| CDX73525 | Canola | plasma membrane | 33.51 | 32.34 |
| CDX98993 | Canola | cytosol | 25.52 | 31.13 |
Protein Annotations
| Gene3D:1.20.1540.10 | MapMan:19.4.2.6 | GO:A0A078DIN9 | EnsemblPlants:CDX88394 | ProteinID:CDX88394 | ProteinID:CDX88394.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 | GO:GO:0006508 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00147921001 |
| InterPro:IPR035952 | PFAM:PF01694 | PANTHER:PTHR22936 | PANTHER:PTHR22936:SF39 | InterPro:Peptidase_S54_rhomboid | InterPro:Peptidase_S54_rhomboid_dom |
| InterPro:Rhomboid-like_sf | SUPFAM:SSF144091 | TMHMM:TMhelix | UniParc:UPI0004EF2459 | : | : |
Description
BnaC06g38380D
Coordinates
chrLK031855:-:735839..737720
Molecular Weight (calculated)
43337.1 Da
IEP (calculated)
8.541
GRAVY (calculated)
0.335
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVTTEPPKT QIDEASSHRN LSFSTPIAGD PSSDKLPFFR HRSRQIKRDT WLVSVFVLLQ IVAFAVTMGV NDCSRNSNDH CAARLLGRFS FQPLSENPML
101: GPSASTFQHM GGLYWNALVE KHEIWRVLTS PWLHSGLFHL LINLGSLIFV GIFMEQRYGP LRIAVIYFLS GIVGSLFAVL FVRNIPSICS GAAFFGLIGA
201: MLSALARNWN LYTSKVSALV IIITISTVNF LIGFLPYIDN FANIGGFISG FVLGLVLLFT PQLRQDPPPP HKGKLFEDDM RSSTRLKEMF DRPVLRIVCL
301: VLFCGILAGV LIAACWGVNL NRYCNWCRYV DCVPTRKWSC SDMTTSCEAM VSDAQLTLTC MANGKFRIFP YTNISQARTQ DLCTLVCT
101: GPSASTFQHM GGLYWNALVE KHEIWRVLTS PWLHSGLFHL LINLGSLIFV GIFMEQRYGP LRIAVIYFLS GIVGSLFAVL FVRNIPSICS GAAFFGLIGA
201: MLSALARNWN LYTSKVSALV IIITISTVNF LIGFLPYIDN FANIGGFISG FVLGLVLLFT PQLRQDPPPP HKGKLFEDDM RSSTRLKEMF DRPVLRIVCL
301: VLFCGILAGV LIAACWGVNL NRYCNWCRYV DCVPTRKWSC SDMTTSCEAM VSDAQLTLTC MANGKFRIFP YTNISQARTQ DLCTLVCT
001: MEVPTESKTT QIDEISHNLS FTTSNAGDSS WDKISFFRHR SRQIKRDTWL VSVFVLLQIV LFAVTMGVND CSGNSHGHCS AKLLGRFSFQ SLSENPMLGP
101: SASTLEHMGG LSWKALTENH EIWRILTSPW LHSGLFHLFI NLGSLIFVGI YMEQQFGPLR IAVIYFLSGI MGSLFAVLFV RNIPSISSGA AFFGLIGAML
201: SALAKNWNLY NSKISALAII FTIFTVNFLI GFLPFIDNFA NIGGFISGFL LGFVLLFKPQ LRQMPPSHKG KLFEDDMNRS TRLKEQFDRP VLRIICLLVF
301: CGILAGVLLA ACWGVNLNRH CHWCRYVDCV PTKKWSCSDM TTSCEAMVSD AQLTLTCMAN GKFRIFPFTN ISQARTEDLC TLVCS
101: SASTLEHMGG LSWKALTENH EIWRILTSPW LHSGLFHLFI NLGSLIFVGI YMEQQFGPLR IAVIYFLSGI MGSLFAVLFV RNIPSISSGA AFFGLIGAML
201: SALAKNWNLY NSKISALAII FTIFTVNFLI GFLPFIDNFA NIGGFISGFL LGFVLLFKPQ LRQMPPSHKG KLFEDDMNRS TRLKEQFDRP VLRIICLLVF
301: CGILAGVLLA ACWGVNLNRH CHWCRYVDCV PTKKWSCSDM TTSCEAMVSD AQLTLTCMAN GKFRIFPFTN ISQARTEDLC TLVCS
Arabidopsis Description
KOMRhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178W8L8]
SUBAcon: [nucleus,peroxisome,plasma membrane]
SUBAcon: [nucleus,peroxisome,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.