Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 3
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015649.1-P | Field mustard | plasma membrane | 86.49 | 86.27 |
| CDX87497 | Canola | plasma membrane | 86.49 | 86.27 |
| CDX88394 | Canola | plasma membrane | 84.68 | 84.02 |
| KRH64762 | Soybean | plasma membrane | 49.87 | 52.17 |
| KRH53148 | Soybean | plasma membrane | 49.35 | 50.94 |
| Solyc11g013320.1.1 | Tomato | plasma membrane | 49.09 | 49.09 |
| VIT_18s0001g04400.t01 | Wine grape | plasma membrane | 41.3 | 46.49 |
| PGSC0003DMT400016755 | Potato | cytosol | 44.94 | 45.05 |
| AT1G12750.4 | Thale cress | plasma membrane | 31.95 | 40.07 |
| AT1G63120.1 | Thale cress | cytosol, golgi, plasma membrane | 32.21 | 39.12 |
| AT5G07250.1 | Thale cress | plasma membrane | 33.77 | 37.57 |
| AT2G29050.1 | Thale cress | golgi, peroxisome, plasma membrane, plastid | 37.4 | 37.02 |
| AT4G23070.1 | Thale cress | plasma membrane | 29.87 | 36.74 |
| AT3G53780.2 | Thale cress | plasma membrane | 36.1 | 35.28 |
| AT1G52580.1 | Thale cress | cytosol, golgi, plasma membrane | 27.79 | 34.63 |
Protein Annotations
| Gene3D:1.20.1540.10 | MapMan:19.4.2.6 | EntrezGene:844122 | UniProt:A0A178W8L8 | UniProt:A0A1P8APQ9 | ProteinID:ANM58585.1 |
| ArrayExpress:AT1G77860 | EnsemblPlantsGene:AT1G77860 | RefSeq:AT1G77860 | TAIR:AT1G77860 | RefSeq:AT1G77860-TAIR-G | EnsemblPlants:AT1G77860.2 |
| Unigene:At.52552 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 |
| GO:GO:0019538 | InterPro:IPR035952 | Symbol:KOM | RefSeq:NP_001321009.1 | ProteinID:OAP14799.1 | PFAM:PF01694 |
| PANTHER:PTHR22936 | PANTHER:PTHR22936:SF39 | InterPro:Peptidase_S54_rhomboid | InterPro:Peptidase_S54_rhomboid_dom | InterPro:Rhomboid-like_sf | SUPFAM:SSF144091 |
| TMHMM:TMhelix | UniParc:UPI000044C40F | SEG:seg | : | : | : |
Description
KOMRhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178W8L8]
Coordinates
chr1:-:29282162..29284480
Molecular Weight (calculated)
43035.7 Da
IEP (calculated)
8.384
GRAVY (calculated)
0.345
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVPTESKTT QIDEISHNLS FTTSNAGDSS WDKISFFRHR SRQIKRDTWL VSVFVLLQIV LFAVTMGVND CSGNSHGHCS AKLLGRFSFQ SLSENPMLGP
101: SASTLEHMGG LSWKALTENH EIWRILTSPW LHSGLFHLFI NLGSLIFVGI YMEQQFGPLR IAVIYFLSGI MGSLFAVLFV RNIPSISSGA AFFGLIGAML
201: SALAKNWNLY NSKISALAII FTIFTVNFLI GFLPFIDNFA NIGGFISGFL LGFVLLFKPQ LRQMPPSHKG KLFEDDMNRS TRLKEQFDRP VLRIICLLVF
301: CGILAGVLLA ACWGVNLNRH CHWCRYVDCV PTKKWSCSDM TTSCEAMVSD AQLTLTCMAN GKFRIFPFTN ISQARTEDLC TLVCS
101: SASTLEHMGG LSWKALTENH EIWRILTSPW LHSGLFHLFI NLGSLIFVGI YMEQQFGPLR IAVIYFLSGI MGSLFAVLFV RNIPSISSGA AFFGLIGAML
201: SALAKNWNLY NSKISALAII FTIFTVNFLI GFLPFIDNFA NIGGFISGFL LGFVLLFKPQ LRQMPPSHKG KLFEDDMNRS TRLKEQFDRP VLRIICLLVF
301: CGILAGVLLA ACWGVNLNRH CHWCRYVDCV PTKKWSCSDM TTSCEAMVSD AQLTLTCMAN GKFRIFPFTN ISQARTEDLC TLVCS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.