Factsheet for VIT_18s0001g04400.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53148	Soybean	plasma membrane	57.89	53.08
KRH64762	Soybean	plasma membrane	56.14	52.17
PGSC0003DMT400016755	Potato	cytosol	58.48	52.08
Solyc11g013320.1.1	Tomato	plasma membrane	58.19	51.69
Bra015649.1-P	Field mustard	plasma membrane	47.95	42.49
CDX87497	Canola	plasma membrane	47.95	42.49
VIT_02s0025g04130.t01	Wine grape	cytosol, plasma membrane, vacuole	40.06	41.77
CDX88394	Canola	plasma membrane	47.37	41.75
VIT_09s0002g06570.t01	Wine grape	plasma membrane	35.09	41.52
AT1G77860.2	Thale cress	nucleus, peroxisome, plasma membrane	46.49	41.3
VIT_16s0100g00640.t01	Wine grape	plasma membrane	38.3	40.31
VIT_08s0007g00470.t01	Wine grape	plasma membrane	42.98	37.89
VIT_06s0004g04890.t01	Wine grape	plasma membrane	42.98	37.6

Protein Annotations

Gene3D:1.20.1540.10	EntrezGene:100259231	wikigene:100259231	MapMan:19.4.2.6	EMBL:AM451580	ProteinID:CAN76609
ProteinID:CAN76609.1	ProteinID:CBI19096	ProteinID:CBI19096.3	UniProt:E0CRE2	EMBL:FN595227	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	InterPro:IPR035952
EntrezGene:LOC100259231	wikigene:LOC100259231	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF39	InterPro:Peptidase_S54_rhomboid
InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf	MEROPS:S54.015	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI0001BE142C
ArrayExpress:VIT_18s0001g04400	EnsemblPlantsGene:VIT_18s0001g04400	EnsemblPlants:VIT_18s0001g04400.t01	RefSeq:XP_002284303	RefSeq:XP_002284303.2	SEG:seg

Description

Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:E0CRE2]

Coordinates

chr18:-:3842548..3845101

Molecular Weight (calculated)

37923.6 Da

IEP (calculated)

8.644

GRAVY (calculated)

0.393

Length

342 amino acids

Sequence
(BLAST)

001: MAEQTQIEIK PPQPAHHSDA GDDQVLEQQV RFFKSGTRKR EDSWVISLFV VLHIVAFAAT MFVNDCWQNS HRDCAIKVLG RLSFQPLWEN PLLGPSSSTL
101: DEMGALQQTF LANHHQTWRL FTCLWLHAGA IHLIINLSSV IFVGIHLEQE FGPLRIGMVY ILSAFFGSLV ATLFLQKSPA VGSSGALFGL LGSMLSGLIC
201: NWKVYTDKLA ALSALLLVAV INFALGLLPY VDNFSNLGGF ISGVLLGFVL LFSPRLPRMA EKKGGFFDYS VKKSIRLKQK LDRPVLRSVS FVLFGLVLAG
301: AIVAVLHGID MNKYCSWCQY INCVPSNRWS CNTKVTACQV EL

Best Arabidopsis Sequence Match ( AT1G77860.1 )
(BLAST)

001: MEVPTESKTT QIDEISHNLS FTTSNAGDSS WDKISFFRHR SRQIKRDTWL VSVFVLLQIV LFAVTMGVND CSGNSHGHCS AKLLGRFSFQ SLSENPMLGP
101: SASTLEHMGG LSWKALTENH EIWRILTSPW LHSGLFHLFI NLGSLIFVGI YMEQQFGPLR IAVIYFLSGI MGSLFAVLFV RNIPSISSGA AFFGLIGAML
201: SALAKNWNLY NSKISALAII FTIFTVNFLI GFLPFIDNFA NIGGFISGFL LGFVLLFKPQ LRQMPPSHKG KLFEDDMNRS TRLKEQFDRP VLRIICLLVF
301: CGILAGVLLA ACWGVNLNRH CHWCRYVDCV PTKKWSCSDM TTSCEVYSSK P

Arabidopsis Description

KOMRhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178W8L8]
SUBAcon: [plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.