Factsheet for PGSC0003DMT400016755

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 4
golgi 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g013320.1.1	Tomato	plasma membrane	87.76	87.53
VIT_18s0001g04400.t01	Wine grape	plasma membrane	52.08	58.48
KRH64762	Soybean	plasma membrane	48.18	50.27
KRH53148	Soybean	plasma membrane	48.18	49.6
AT1G77860.2	Thale cress	nucleus, peroxisome, plasma membrane	45.05	44.94
Bra015649.1-P	Field mustard	plasma membrane	44.53	44.3
CDX87497	Canola	plasma membrane	44.53	44.3
CDX88394	Canola	plasma membrane	44.01	43.56
PGSC0003DMT400007890	Potato	plasma membrane	33.59	39.09
PGSC0003DMT400037141	Potato	cytosol, golgi, plasma membrane	32.29	38.99
PGSC0003DMT400022764	Potato	plasma membrane	36.98	36.79
PGSC0003DMT400011238	Potato	plasma membrane	33.07	32.82

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019538	InterPro:IPR035952	UniProt:M1A838	PFAM:PF01694	EnsemblPlantsGene:PGSC0003DMG400006548
PGSC:PGSC0003DMG400006548	EnsemblPlants:PGSC0003DMT400016755	PANTHER:PTHR22936	PANTHER:PTHR22936:SF39	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sf	MEROPS:S54.A02	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI0002966A87	SEG:seg

Description

KOM [Source:PGSC_GENE;Acc:PGSC0003DMG400006548]

Coordinates

chr11:-:10014472..10016581

Molecular Weight (calculated)

43077.7 Da

IEP (calculated)

8.483

GRAVY (calculated)

0.330

Length

384 amino acids

Sequence
(BLAST)

001: MADSSKSQTQ VEIKQQCAPM ASTFSTEMTA DERVPFPFFR PLSQKRANTW IISLFVILHL GAFTVTMIVN DCWENSHGDC ALKPLRRFSF QPLSENPLLG
101: PSASTSVPSF SFTNHSISCL NYLIILKFRF DYFNASFELL EEIGALQKTL LTNNQQLWRI FTSPWLHAGL FHLIINLSSV IFVGLHLEQE FGSFRIGVIY
201: ILSAITGSLV ASLFVQDRPS VCSSGALVGL LGTLLSGLIR NWKSYTNKFS GLVATMTILM TNLVLGLIPY INNFANIGGF MSGFLLGFVL LFKPQQEKLA
301: RNKGGLFEFD AKDIVKCRKS LDKPVQRVAA LVIFAFLLAG IIMAVLHGID INKYCSWCHY FDCIPSKWWS CTDKPFHCEV SHYT

Best Arabidopsis Sequence Match ( AT1G77860.1 )
(BLAST)

001: MEVPTESKTT QIDEISHNLS FTTSNAGDSS WDKISFFRHR SRQIKRDTWL VSVFVLLQIV LFAVTMGVND CSGNSHGHCS AKLLGRFSFQ SLSENPMLGP
101: SASTLEHMGG LSWKALTENH EIWRILTSPW LHSGLFHLFI NLGSLIFVGI YMEQQFGPLR IAVIYFLSGI MGSLFAVLFV RNIPSISSGA AFFGLIGAML
201: SALAKNWNLY NSKISALAII FTIFTVNFLI GFLPFIDNFA NIGGFISGFL LGFVLLFKPQ LRQMPPSHKG KLFEDDMNRS TRLKEQFDRP VLRIICLLVF
301: CGILAGVLLA ACWGVNLNRH CHWCRYVDCV PTKKWSCSDM TTSCEVYSSK P

Arabidopsis Description

KOMRhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178W8L8]
SUBAcon: [plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.