Factsheet for PGSC0003DMT400022764

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 5
plastid 3
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
iPSORT:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	golgi, plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g010880.2.1	Tomato	extracellular	96.37	97.13
VIT_08s0007g00470.t01	Wine grape	plasma membrane	70.73	70.36
KRG99546	Soybean	plasma membrane	66.32	66.67
KRH66050	Soybean	plasma membrane	66.32	66.49
KRG99955	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	62.44	60.86
PGSC0003DMT400037141	Potato	cytosol, golgi, plasma membrane	49.22	59.75
KRH49106	Soybean	plasma membrane	40.67	58.58
PGSC0003DMT400007890	Potato	plasma membrane	49.74	58.18
CDY65838	Canola	plasma membrane	58.03	57.29
CDX78204	Canola	plasma membrane	58.03	57.29
CDY30844	Canola	cytosol, peroxisome, plasma membrane	57.51	56.78
CDX76189	Canola	cytosol, peroxisome, plasma membrane	57.25	56.52
PGSC0003DMT400011238	Potato	plasma membrane	56.22	56.07
AT3G53780.2	Thale cress	plasma membrane	56.99	55.84
CDX73525	Canola	plasma membrane	56.99	54.73
Bra014862.1-P	Field mustard	cytosol	56.99	51.89
PGSC0003DMT400016755	Potato	cytosol	36.79	36.98

Protein Annotations

Gene3D:1.20.1540.10	EntrezGene:102601550	MapMan:19.4.2.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009506	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538
InterPro:IPR035952	UniProt:M1AH71	PFAM:PF01694	EnsemblPlantsGene:PGSC0003DMG400008831	PGSC:PGSC0003DMG400008831	EnsemblPlants:PGSC0003DMT400022764
PANTHER:PTHR22936	PANTHER:PTHR22936:SF38	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf	MEROPS:S54.A06
SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI000295052F	RefSeq:XP_006341018.1	SEG:seg	:

Description

KOM [Source:PGSC_GENE;Acc:PGSC0003DMG400008831]

Coordinates

chr9:+:1694067..1702475

Molecular Weight (calculated)

42628.5 Da

IEP (calculated)

9.535

GRAVY (calculated)

0.441

Length

386 amino acids

Sequence
(BLAST)

001: MAGGVHSQPE IQIQVHSRKG GNSVYPVEPA TTTTASSGGP AFYREIKHFK KWFPWLIPSF VIVNVVTFLV TMYVNNCPHN SVSCYAGFLG RFSFQPFSEN
101: PLLGPSSTTL EKMGALDVNK VVREHQGWRL ITCMWLHGGV FHLLANMLSL LVIGIRLERE FGFVRIGVLY IIAGLGGSLF SALFIKSNIS VGASGALFGL
201: LGSMLSELII NWTIYANKIA VLVTLVVIII INLAVGLLPH VDNFAHIGGF VSGFLLGFVF LIRPQFGWVS QRYASRAYST LAKPKFKMYQ MVLWVVSLIL
301: LIIGFTSGLV MLFRGVDLNA HCSWCHYMSC LPTSRWSCNT EPVSCMSEQT SNQLTLTCSN SNKTRTYSLS NPSTSKIQGL CTQLCR

Best Arabidopsis Sequence Match ( AT2G29050.1 )
(BLAST)

001: MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP AIVVANIALF AISMFINNCP KNSAYCLARF LGRFAFQPMK
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR

Arabidopsis Description

RBL1RHOMBOID-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQX7]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.