Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30844 | Canola | cytosol, peroxisome, plasma membrane | 88.32 | 89.0 |
| CDX78204 | Canola | plasma membrane | 88.32 | 89.0 |
| CDX76189 | Canola | cytosol, peroxisome, plasma membrane | 88.32 | 89.0 |
| CDY65838 | Canola | plasma membrane | 88.07 | 88.75 |
| CDX73525 | Canola | plasma membrane | 88.32 | 86.57 |
| Bra014862.1-P | Field mustard | cytosol | 86.04 | 79.95 |
| TraesCS4A01G176100.1 | Wheat | plasma membrane | 47.46 | 58.99 |
| KRH66050 | Soybean | plasma membrane | 57.36 | 58.7 |
| KRG99546 | Soybean | plasma membrane | 57.11 | 58.59 |
| AT1G63120.1 | Thale cress | cytosol, golgi, plasma membrane | 46.45 | 57.73 |
| Os01t0147300-01 | Rice | plasma membrane | 29.7 | 57.35 |
| VIT_08s0007g00470.t01 | Wine grape | plasma membrane | 56.35 | 57.22 |
| PGSC0003DMT400022764 | Potato | plasma membrane | 55.84 | 56.99 |
| Solyc09g010880.2.1 | Tomato | extracellular | 55.33 | 56.92 |
| AT2G29050.1 | Thale cress | golgi, peroxisome, plasma membrane, plastid | 53.55 | 54.24 |
| TraesCS3D01G070700.1 | Wheat | mitochondrion, plasma membrane | 41.37 | 53.44 |
| HORVU4Hr1G027850.1 | Barley | peroxisome | 51.27 | 53.3 |
| TraesCS4D01G136600.2 | Wheat | plasma membrane | 51.27 | 53.16 |
| AT1G12750.4 | Thale cress | plasma membrane | 41.37 | 53.09 |
| TraesCS4B01G141600.1 | Wheat | plasma membrane | 51.52 | 52.73 |
| KRG99955 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane | 52.79 | 52.53 |
| Os11t0704800-01 | Rice | plasma membrane | 48.98 | 51.6 |
| KRH49106 | Soybean | plasma membrane | 35.03 | 51.49 |
| AT5G07250.1 | Thale cress | plasma membrane | 45.18 | 51.45 |
| AT4G23070.1 | Thale cress | plasma membrane | 40.86 | 51.44 |
| TraesCS3B01G085300.1 | Wheat | plasma membrane | 48.48 | 51.07 |
| TraesCS3A01G071500.1 | Wheat | plasma membrane | 47.97 | 50.53 |
| EES00318 | Sorghum | golgi, peroxisome, plasma membrane | 53.05 | 49.64 |
| Zm00001d048606_P001 | Maize | cytosol, nucleus, plasma membrane | 49.49 | 48.63 |
| OQU84103 | Sorghum | golgi, peroxisome, plasma membrane, plastid | 51.02 | 46.64 |
| AT1G52580.1 | Thale cress | cytosol, golgi, plasma membrane | 36.55 | 46.6 |
| Zm00001d039870_P002 | Maize | plasma membrane | 54.06 | 42.43 |
| AT1G77860.2 | Thale cress | nucleus, peroxisome, plasma membrane | 35.28 | 36.1 |
Protein Annotations
| Gene3D:1.20.1540.10 | MapMan:19.4.2.6 | EntrezGene:824545 | ProteinID:AEE79142.1 | ProteinID:AEE79143.1 | ProteinID:ANM63615.1 |
| ArrayExpress:AT3G53780 | EnsemblPlantsGene:AT3G53780 | RefSeq:AT3G53780 | TAIR:AT3G53780 | RefSeq:AT3G53780-TAIR-G | EnsemblPlants:AT3G53780.2 |
| TAIR:AT3G53780.2 | Symbol:ATRBL4 | Unigene:At.19072 | EMBL:BT029533 | ProteinID:CAB88340.1 | UniProt:F4JBM4 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009506 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 | InterPro:IPR035952 | RefSeq:NP_001325690.1 | RefSeq:NP_566989.1 |
| RefSeq:NP_850698.1 | PFAM:PF01694 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR22936 | PANTHER:PTHR22936:SF46 | InterPro:Peptidase_S54_rhomboid | InterPro:Peptidase_S54_rhomboid_dom |
| InterPro:Rhomboid-like_sf | MEROPS:S54.A06 | SUPFAM:SSF144091 | TMHMM:TMhelix | UniParc:UPI0000196FF7 | SEG:seg |
Description
RBL4RHOMBOID-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:F4JBM4]
Coordinates
chr3:-:19924538..19927026
Molecular Weight (calculated)
43511.1 Da
IEP (calculated)
9.054
GRAVY (calculated)
0.189
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEKDSETAP IWGKTRERER SNNNNIQPMD LESSSSVSGQ QRSLTQSRSS YEERGRGVKE FRSWFPWLIP CFVVANVAVF VITMYVNNCP KKSGDCFADF
101: LGRFSFQNTR ENPLLGPSSL TLQTMGGLDV KKVVKGDEGW RLLSCNWLHG GVVHLLMNML TLLFIGIRME REFGFIRIGL LYLISGFGGS ILSALFLRSN
201: ISVGASGAVF GLLGGMLSEI FINWTIYSNK VVTIVTLVLI VAVNLGLGVL PGVDNFAHIG GFATGFLLGF VLLIRPHYGW INQRNGPGAK PHRFKIYQGI
301: LWTISLLILV AGFIVGLISL FNNVDGNEHC SWCHYLSCVP TSKWSCNREP ASCTTTQLGN QLSMTCLRNG KSASYILANP SDSRINSLCV QLCR
101: LGRFSFQNTR ENPLLGPSSL TLQTMGGLDV KKVVKGDEGW RLLSCNWLHG GVVHLLMNML TLLFIGIRME REFGFIRIGL LYLISGFGGS ILSALFLRSN
201: ISVGASGAVF GLLGGMLSEI FINWTIYSNK VVTIVTLVLI VAVNLGLGVL PGVDNFAHIG GFATGFLLGF VLLIRPHYGW INQRNGPGAK PHRFKIYQGI
301: LWTISLLILV AGFIVGLISL FNNVDGNEHC SWCHYLSCVP TSKWSCNREP ASCTTTQLGN QLSMTCLRNG KSASYILANP SDSRINSLCV QLCR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.