Factsheet for TraesCS3D01G070700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

mitochondrion 3
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G085300.1	Wheat	plasma membrane	98.03	79.95
TraesCS3A01G071500.1	Wheat	plasma membrane	97.05	79.14
EES00318	Sorghum	golgi, peroxisome, plasma membrane	80.66	58.43
Os01t0147300-01	Rice	plasma membrane	37.38	55.88
TraesCS5D01G320400.1	Wheat	plasma membrane	53.44	50.94
Zm00001d039870_P002	Maize	plasma membrane	81.31	49.4
TraesCS7D01G270400.1	Wheat	plasma membrane	53.11	49.39
TraesCS1D01G187500.1	Wheat	plasma membrane	51.48	48.61
CDY47879	Canola	plasma membrane	59.34	47.51
KRH66050	Soybean	plasma membrane	59.67	47.27
VIT_06s0004g04890.t01	Wine grape	plasma membrane	60.33	47.06
AT2G29050.1	Thale cress	golgi, peroxisome, plasma membrane, plastid	60.0	47.04
KRG99546	Soybean	plasma membrane	58.69	46.61
KRH10251	Soybean	plasma membrane	59.34	46.53
CDY39528	Canola	plasma membrane	58.36	46.48
KRH23080	Soybean	plasma membrane	59.02	45.92
VIT_08s0007g00470.t01	Wine grape	plasma membrane	58.36	45.88
TraesCS4D01G350300.1	Wheat	plasma membrane	49.84	45.65
Bra028389.1-P	Field mustard	plasma membrane	59.34	45.36
PGSC0003DMT400011238	Potato	plasma membrane	56.72	44.7
Solyc06g005580.2.1	Tomato	plasma membrane	56.72	44.7
TraesCS4D01G136600.2	Wheat	plasma membrane	55.08	44.21
KRH49106	Soybean	plasma membrane	38.69	44.03
TraesCS2D01G398500.1	Wheat	plasma membrane	48.2	43.36
KRG99955	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	54.43	41.92
AT3G53780.2	Thale cress	plasma membrane	53.44	41.37
CDY65838	Canola	plasma membrane	52.13	40.66
CDX78204	Canola	plasma membrane	52.13	40.66
CDX73525	Canola	plasma membrane	52.13	39.55
CDY30844	Canola	cytosol, peroxisome, plasma membrane	50.49	39.39
CDX76189	Canola	cytosol, peroxisome, plasma membrane	50.49	39.39
Bra014862.1-P	Field mustard	cytosol	49.84	35.85

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	InterPro:IPR035952	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF46	InterPro:Peptidase_S54_rhomboid
InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf	SUPFAM:SSF144091	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3D01G070700	EnsemblPlants:TraesCS3D01G070700.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:31716402..31724314

Molecular Weight (calculated)

33023.2 Da

IEP (calculated)

8.711

GRAVY (calculated)

0.690

Length

305 amino acids

Sequence
(BLAST)

001: MPRRGEAQEF RPFRRWFPFL VPLFVAANIA LFVRTMYVND CPAHAAAAAA GIGDSVGGAA GAAAAHGCML EPDLGRYAFQ PYKENPLVGP TSATLLEMGA
101: LETGKVAKDH EWWRLITCIW LHAGVIHILA NMLSLLMIGI RLEKEFGFLR IGTLYVISGV GGSLLSALFM VSNISVGASG ALFGLLGSML SELITNWTIY
201: ENKCAALLTL VMIILINLAV GILPHVDNFA HIGGFVSGFF LGFVLLMRPQ FGYINQKNSR LGVHSGTPKS KYKIYQIILL VIALVILICG FITGFVLLMQ
301: GFDAS

Best Arabidopsis Sequence Match ( AT2G29050.2 )
(BLAST)

001: MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP AIVVANIALF AISMFINNCP KNSAYCLARF LGRFAFQPMK
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK VAKSSLVKQA ALSMNDVSIM SLVFLHLQFA ALLTLIFIIA INLAVGILPH VDNFAHLGGF TSGFLLGFVF LIRPQYGYFN
301: QRNNPRGYAA PSAKSKHKPY QYVLWITSLV LLIAGYTSFS FIMITK

Arabidopsis Description

RBL1RHOMBOID-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQX7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.