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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • peroxisome 1
  • mitochondrion 1
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:peroxisome, plasma membrane
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G340600.1
TraesCS1D01G342600.1
TraesCS2A01G346700.1
TraesCS2B01G365000.1
TraesCS2D01G345400.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G63120.1 TraesCS2A01G346700.1 AT1G27300.1 21798944
AT1G63120.1 TraesCS2B01G365000.1 AT1G27300.1 21798944
AT1G63120.1 TraesCS2D01G345400.1 AT1G27300.1 21798944
AT5G07250.1 TraesCS1A01G340600.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS1D01G342600.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3A01G274800.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3A01G313000.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3B01G158900.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3B01G308400.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3D01G141300.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3D01G274500.1 AT3G16310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5A01G314000.1 Wheat plasma membrane 100.0 99.38
TraesCS5B01G314900.1 Wheat plasma membrane 100.0 99.07
HORVU5Hr1G080690.2 Barley plasma membrane 98.44 98.13
Os09t0525900-01 Rice plasma membrane 88.44 87.62
EER99221 Sorghum cytosol, peroxisome, plasma membrane 86.88 85.54
Zm00001d021231_P002 Maize plasma membrane 86.25 85.19
Zm00001d006179_P002 Maize plasma membrane 86.56 84.71
TraesCS7D01G270400.1 Wheat plasma membrane 81.25 79.27
GSMUA_Achr2P03320_001 Banana cytosol, golgi, plasma membrane 69.69 69.47
GSMUA_Achr1P07920_001 Banana plasma membrane 69.06 68.85
GSMUA_Achr9P20880_001 Banana plasma membrane 66.88 66.46
PGSC0003DMT400037141 Potato cytosol, golgi, plasma membrane 65.31 65.72
AT1G63120.1 Thale cress cytosol, golgi, plasma membrane 64.38 64.98
VIT_02s0025g04130.t01 Wine grape cytosol, plasma membrane, vacuole 66.56 64.94
Solyc03g026080.2.1 Tomato plasma membrane 64.38 64.78
KRH09112 Soybean plasma membrane 65.94 64.13
KRH38564 Soybean plasma membrane 65.31 63.33
Bra026997.1-P Field mustard cytosol, golgi, plasma membrane 63.12 63.32
CDY67235 Canola plasma membrane 63.12 63.32
VIT_16s0100g00640.t01 Wine grape plasma membrane 64.06 63.08
CDY45976 Canola plasma membrane 62.81 63.01
CDY47350 Canola plasma membrane 61.88 62.86
Bra027622.1-P Field mustard plasma membrane 61.56 62.74
CDX98992 Canola plasma membrane 66.25 62.35
KRG91456 Soybean cytosol, golgi, plasma membrane 63.75 62.01
KRH35359 Soybean cytosol, golgi, plasma membrane 63.75 61.82
CDY49197 Canola plasma membrane 61.56 61.37
Bra009279.1-P Field mustard cytosol, peroxisome, plasma membrane 66.25 61.1
CDX70021 Canola plasma membrane 65.94 60.81
AT5G07250.1 Thale cress plasma membrane 65.62 60.69
Solyc08g080500.2.1 Tomato cytosol, golgi, plasma membrane 62.81 60.36
TraesCS4D01G350300.1 Wheat plasma membrane 62.81 60.36
AT1G12750.4 Thale cress plasma membrane 57.81 60.26
TraesCS1D01G187500.1 Wheat plasma membrane 60.62 60.06
PGSC0003DMT400007890 Potato plasma membrane 61.88 60.0
CDX70020 Canola mitochondrion, plasma membrane 60.0 59.26
CDY66606 Canola plasma membrane 56.25 59.21
Bra019783.1-P Field mustard plasma membrane 56.25 59.21
Bra005930.1-P Field mustard plasma membrane 59.06 58.15
CDX78286 Canola plasma membrane 58.75 57.85
CDX81043 Canola plasma membrane 58.44 57.36
TraesCS2D01G398500.1 Wheat plasma membrane 59.38 56.05
Bra013673.1-P Field mustard plasma membrane 47.19 53.55
CDY53134 Canola plasma membrane 52.5 53.5
TraesCS3D01G070700.1 Wheat mitochondrion, plasma membrane 50.94 53.44
CDY41251 Canola plasma membrane 52.19 53.35
CDX98993 Canola cytosol 52.19 52.52
AT4G23070.1 Thale cress plasma membrane 51.25 52.4
CDY60266 Canola plasma membrane 57.5 51.4
TraesCS4D01G136600.2 Wheat plasma membrane 60.94 51.32
Bra009280.1-P Field mustard cytosol 58.12 49.87
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575
GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016787
GO:GO:0019538InterPro:IPR035952PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF62InterPro:Peptidase_S54_rhomboid
InterPro:Peptidase_S54_rhomboid_domInterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixEnsemblPlantsGene:TraesCS5D01G320400EnsemblPlants:TraesCS5D01G320400.1
SEG:seg:::::
Description
No Description!
Coordinates
chr5D:-:412599615..412602219
Molecular Weight (calculated)
35008.2 Da
IEP (calculated)
9.090
GRAVY (calculated)
0.471
Length
320 amino acids
Sequence
(BLAST)
001: MEGGGEGKGR AAPAAGGGFG GYESAGDRKW WPWLVPTVIV ACVAVFVVEM WVNDCPRHGS ALGGGCVAGF LRRFSFQPLR ENPLLGPSST TLGKMGALDW
101: NKVVHQHQGW RLISCIWLHA GLIHLVVNML SLLFIGIRLE QQFGFVRIGA IYLLSGFGGS VMSALFLRNN YISVGASGAL FGLLGSMLSE LLMNWTIYSN
201: KVAAIITLLF IIAINVAIGI LPHADNFAHI GGFLTGFLLG FVLLARPQFG WLERSELPHT NQPPKYKPYQ YVLWVVALVL LLVGFTLSLV MLFKGKNGND
301: GCHWCHYLNC VPTSRWKCDT
Best Arabidopsis Sequence Match ( AT1G63120.1 )
(BLAST)
001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
Arabidopsis Description
RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.