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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • extracellular 1
  • golgi 1
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70995
CDX88803
CDX92368
CDX97739
CDY09128
CDY30157
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G07250.1 CDX97739 AT3G16310.1 21798944
AT5G07250.1 CDY30157 AT3G16310.1 21798944
AT5G07250.1 CDX70995 AT5G22290.1 21798944
AT5G07250.1 CDX88803 AT5G22290.1 21798944
AT5G07250.1 CDX92368 AT5G22290.1 21798944
AT5G07250.1 CDY09128 AT5G22290.1 21798944
AT5G07250.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX70021 Canola plasma membrane 96.76 94.81
Bra009279.1-P Field mustard cytosol, peroxisome, plasma membrane 95.88 93.95
AT5G07250.1 Thale cress plasma membrane 83.24 81.79
CDX70020 Canola mitochondrion, plasma membrane 75.0 78.7
CDX78286 Canola plasma membrane 74.41 77.85
CDX81043 Canola plasma membrane 72.35 75.46
CDX98993 Canola cytosol 70.29 75.16
PGSC0003DMT400037141 Potato cytosol, golgi, plasma membrane 63.82 68.24
Solyc03g026080.2.1 Tomato plasma membrane 63.53 67.92
TraesCS5D01G320400.1 Wheat plasma membrane 62.35 66.25
KRH09112 Soybean plasma membrane 63.82 65.96
VIT_16s0100g00640.t01 Wine grape plasma membrane 62.94 65.85
TraesCS5A01G314000.1 Wheat plasma membrane 62.35 65.84
HORVU5Hr1G080690.2 Barley plasma membrane 62.06 65.73
KRG91456 Soybean cytosol, golgi, plasma membrane 63.53 65.65
TraesCS5B01G314900.1 Wheat plasma membrane 62.35 65.63
KRH38564 Soybean plasma membrane 62.94 64.85
GSMUA_Achr11P... Banana cytosol 63.82 64.58
KRH35359 Soybean cytosol, golgi, plasma membrane 62.65 64.55
Zm00001d021231_P002 Maize plasma membrane 61.47 64.51
Os08t0546700-01 Rice plasma membrane 61.18 64.4
Os09t0525900-01 Rice plasma membrane 61.18 64.4
CDY47350 Canola plasma membrane 59.12 63.81
EER99221 Sorghum cytosol, peroxisome, plasma membrane 60.88 63.69
Zm00001d052734_P002 Maize plasma membrane 60.29 63.66
CDY45976 Canola plasma membrane 59.41 63.32
Zm00001d006179_P002 Maize plasma membrane 60.88 63.3
CDY67235 Canola plasma membrane 58.82 62.7
CDY49197 Canola plasma membrane 58.82 62.31
TraesCS7A01G269900.1 Wheat plasma membrane 59.12 62.23
TraesCS7D01G270400.1 Wheat plasma membrane 60.0 62.2
TraesCS7B01G168100.1 Wheat plasma membrane 60.0 62.2
HORVU7Hr1G056630.1 Barley plasma membrane 59.41 61.96
Os03t0116400-01 Rice cytosol, peroxisome, plasma membrane 59.12 61.85
Os10t0521900-01 Rice plasma membrane 60.0 61.45
Zm00001d029668_P001 Maize plasma membrane 60.29 61.38
Zm00001d029667_P001 Maize plasma membrane 60.29 61.38
EER94630 Sorghum cytosol, golgi, plasma membrane 60.29 61.19
TraesCS1B01G196600.1 Wheat plasma membrane 57.94 60.43
TraesCS1D01G187500.1 Wheat plasma membrane 57.35 60.37
HORVU1Hr1G048610.3 Barley plasma membrane 57.35 60.0
CDY66606 Canola plasma membrane 53.53 59.87
TraesCS5A01G526000.1 Wheat plasma membrane 58.24 59.64
TraesCS1A01G188900.1 Wheat plasma membrane 57.35 59.63
TraesCS4D01G350300.1 Wheat plasma membrane 57.65 58.86
EER95642 Sorghum cytosol, golgi, plasma membrane 56.18 58.59
TraesCS4B01G356600.1 Wheat plasma membrane 57.35 58.38
TraesCS4A01G179600.1 Wheat plasma membrane 32.94 58.33
Zm00001d027355_P001 Maize plasma membrane 55.0 58.07
Os04t0569300-01 Rice cytosol 55.59 55.26
EES11282 Sorghum cytosol 54.71 54.71
CDY41251 Canola plasma membrane 50.29 54.63
CDY53134 Canola plasma membrane 50.29 54.46
Zm00001d002632_P001 Maize plasma membrane 53.82 53.82
TraesCS2B01G419100.1 Wheat plasma membrane 52.94 53.25
TraesCS2D01G398500.1 Wheat plasma membrane 52.94 53.1
TraesCS2A01G401000.1 Wheat plasma membrane 53.24 53.08
CDY60266 Canola plasma membrane 55.29 52.51
CDY47879 Canola plasma membrane 56.47 50.39
CDY39528 Canola plasma membrane 56.76 50.39
HORVU4Hr1G086150.3 Barley plastid 57.35 50.26
CDX87921 Canola plasma membrane 30.88 50.0
CDY60552 Canola plasma membrane 45.0 49.04
CDY40148 Canola plasma membrane 43.53 46.98
CDY65908 Canola plasma membrane 43.53 46.98
CDY65838 Canola plasma membrane 53.24 46.29
CDX78204 Canola plasma membrane 53.24 46.29
CDX73525 Canola plasma membrane 53.53 45.27
CDY30844 Canola cytosol, peroxisome, plasma membrane 51.47 44.76
CDX76189 Canola cytosol, peroxisome, plasma membrane 51.18 44.5
HORVU3Hr1G029090.1 Barley plastid 18.82 42.11
HORVU0Hr1G006330.1 Barley plastid 18.82 42.11
HORVU2Hr1G095170.6 Barley mitochondrion 44.12 40.65
CDX87497 Canola plasma membrane 37.94 33.42
CDX88394 Canola plasma membrane 36.76 32.22
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6GO:A0A078ED55EnsemblPlants:CDX98992ProteinID:CDX98992ProteinID:CDX98992.1
GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575GO:GO:0006508GO:GO:0008150
GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00107112001
InterPro:IPR035952PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF62InterPro:Peptidase_S54_rhomboidInterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixUniParc:UPI0004EEA21CSEG:seg:
Description
BnaC09g48430D
Coordinates
chrLK031907:+:1040728..1042484
Molecular Weight (calculated)
37655.4 Da
IEP (calculated)
9.278
GRAVY (calculated)
0.355
Length
340 amino acids
Sequence
(BLAST)
001: MAIGDDDLEN RMSAKPHHRG IGSKGGDRTG FGPPPLVYSD LGGDASPQWT SWLVPMFVVA NVAVFVVTMF VNNCPAHSHG PNRRCVAEFL GRLSFEPLRG
101: NPLFGPSSRT LEKLGSLEWD RVVEKHQGWR LLTCIWLHAG VIHLAANMLS LVFIGIRLEQ QFGFVRIGVI YLLSGIGGSI LSSLFVRNSI SVGASGALFG
201: LLGSMLSELL TNWTIYSNKI AALLTLLFVI AINLAIGILP HVDNFAHVGG FLTGFLLGFV LLARPQFKWL ARENMPQGRR LTSKYKPYQY LLWLLSLALL
301: VLGFVMALVL LFKGEDGNDH CRWCRYLRCI PTSRWSCDDV
Best Arabidopsis Sequence Match ( AT5G07250.1 )
(BLAST)
001: MAVGDDDLEN RMSAKDRGIG SRGGDRNRIG PPPLPVALSS STEFGDNALS SRWTSWLVPM FVVANVAVFV VAMFVNNCPN HFESHRLRGH CVAKFLGRLS
101: FEPLRTNPLF GPSSHTLEKL GALEWSKVVE KKEGWRLLTC IWLHAGVIHL GANMLSLVFI GIRLEQQFGF VRIGVIYLLS GIGGSVLSSL FIRNSISVGA
201: SGALFGLLGS MLSELFTNWT IYSNKIAALL TLLFVILINL AIGILPHVDN FAHVGGFVTG FLLGFILLAR PQFKWLAREH MPQGTPLRYK YKTYQYLLWL
301: LSLVLLIAGF VVALLMLFRG ENGNDHCRWC HYLRCVPTSS WRCDDV
Arabidopsis Description
RBL3Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UBV1]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.