Skip to main content
crop-pal logo
Wheat
Search for another protein from :
Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • peroxisome 1
  • mitochondrion 1
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:peroxisome, plasma membrane
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G340600.1
TraesCS1D01G342600.1
TraesCS2A01G346700.1
TraesCS2B01G365000.1
TraesCS2D01G345400.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G63120.1 TraesCS2A01G346700.1 AT1G27300.1 21798944
AT1G63120.1 TraesCS2B01G365000.1 AT1G27300.1 21798944
AT1G63120.1 TraesCS2D01G345400.1 AT1G27300.1 21798944
AT5G07250.1 TraesCS1A01G340600.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS1D01G342600.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3A01G274800.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3A01G313000.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3B01G158900.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3B01G308400.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3D01G141300.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3D01G274500.1 AT3G16310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5A01G526000.1 Wheat plasma membrane 96.41 96.99
TraesCS4D01G350300.1 Wheat plasma membrane 96.41 96.7
HORVU4Hr1G086150.3 Barley plastid 94.91 81.7
EER95642 Sorghum cytosol, golgi, plasma membrane 77.84 79.75
Os03t0116400-01 Rice cytosol, peroxisome, plasma membrane 77.25 79.38
Zm00001d027355_P001 Maize plasma membrane 73.95 76.71
TraesCS1B01G196600.1 Wheat plasma membrane 66.77 68.4
TraesCS5B01G314900.1 Wheat plasma membrane 59.58 61.61
AT1G63120.1 Thale cress cytosol, golgi, plasma membrane 58.08 61.2
Solyc03g026080.2.1 Tomato plasma membrane 58.08 61.01
PGSC0003DMT400037141 Potato cytosol, golgi, plasma membrane 58.08 61.01
VIT_02s0025g04130.t01 Wine grape cytosol, plasma membrane, vacuole 59.58 60.67
TraesCS7B01G168100.1 Wheat plasma membrane 59.58 60.67
Bra026997.1-P Field mustard cytosol, golgi, plasma membrane 57.78 60.5
CDY45976 Canola plasma membrane 57.78 60.5
CDY67235 Canola plasma membrane 57.78 60.5
KRG91456 Soybean cytosol, golgi, plasma membrane 59.58 60.49
KRH09112 Soybean plasma membrane 58.98 59.88
KRH35359 Soybean cytosol, golgi, plasma membrane 58.98 59.7
CDY47350 Canola plasma membrane 56.29 59.68
Bra027622.1-P Field mustard plasma membrane 55.99 59.55
Solyc08g080500.2.1 Tomato cytosol, golgi, plasma membrane 59.28 59.46
PGSC0003DMT400007890 Potato plasma membrane 58.68 59.39
CDY49197 Canola plasma membrane 56.59 58.88
KRH38564 Soybean plasma membrane 58.08 58.79
VIT_16s0100g00640.t01 Wine grape plasma membrane 56.89 58.46
CDX98992 Canola plasma membrane 58.38 57.35
Bra009279.1-P Field mustard cytosol, peroxisome, plasma membrane 59.58 57.35
CDX78286 Canola plasma membrane 55.69 57.23
CDX70021 Canola plasma membrane 59.28 57.06
Bra005930.1-P Field mustard plasma membrane 55.39 56.92
AT5G07250.1 Thale cress plasma membrane 58.68 56.65
CDX81043 Canola plasma membrane 55.09 56.44
CDX70020 Canola mitochondrion, plasma membrane 53.59 55.25
TraesCS2B01G419100.1 Wheat plasma membrane 55.39 54.73
Bra019783.1-P Field mustard plasma membrane 49.4 54.28
CDY66606 Canola plasma membrane 49.4 54.28
Bra013673.1-P Field mustard plasma membrane 45.51 53.9
AT1G12750.4 Thale cress plasma membrane 49.4 53.75
CDY53134 Canola plasma membrane 50.0 53.18
CDY41251 Canola plasma membrane 49.7 53.04
AT4G23070.1 Thale cress plasma membrane 48.8 52.08
CDX98993 Canola cytosol 47.31 49.69
CDY60266 Canola plasma membrane 51.2 47.77
Bra009280.1-P Field mustard cytosol 52.69 47.19
TraesCS4B01G141600.1 Wheat plasma membrane 52.99 45.97
TraesCS3B01G085300.1 Wheat plasma membrane 49.1 43.85
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575
GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016787
GO:GO:0019538InterPro:IPR035952PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF21InterPro:Peptidase_S54_rhomboid
InterPro:Peptidase_S54_rhomboid_domInterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixEnsemblPlantsGene:TraesCS4B01G356600EnsemblPlants:TraesCS4B01G356600.1
SEG:seg:::::
Description
No Description!
Coordinates
chr4B:-:646973730..646976170
Molecular Weight (calculated)
36407.9 Da
IEP (calculated)
9.952
GRAVY (calculated)
0.395
Length
334 amino acids
Sequence
(BLAST)
001: MATSRADVEK GASSSPRKAK QEPGKVPAPL YPQHEGEREW TPWLVPSILV ANITVFTIAM YYNNCPAHNA RPGRDDGQCV ARFLHRFSFQ PLRQNPLLGP
101: SSATLVKMGA LVWDKVVHGH QGWRLFSCMW MHAGVLHLLA NMLSLLFIGL RLEQQFGYVR IGAIYLVSGV GGSVLSSLFI RSAISVGASG ALFGLLGAML
201: AELLSNWTIY TNKVAAVTTL LFVIAVNLVL GILPHVNNFA HIGGFLTGFL LGFVLLMRPH FGWMERYRLP AGSPCTARKY LPYQWALMAA ALALAVAGFA
301: IGLAMVFRGA NANSSCGWCH YLSCVPTKSW TCAN
Best Arabidopsis Sequence Match ( AT1G12750.1 )
(BLAST)
001: MRSRDMERGR KHRGDTQWTA WLTPTIVVAN VSIFIVVMYT NDCPKTTTGA NGDCVAKLLR RFSFQPLREN PFLGPSSSTL EKLGALDWKK VVQGNEKWRL
101: ITAMWLHAGI IHLVMNMFDV IIFGIRLEQQ FGFIRIGLIY LISGFGGSIL SALFLQKSIS VGASGALLGL MGAMLSELLT NWTIYKSKLC ALLSFLFIIA
201: INLAIGLLPW VDNFAHIGGL LTGFCLGFIL LMQPQSGWEE FRNSSQYGAR ARSKYNPCQY VLFFVAAVLV VAGLTVGLVM LFDGENGNKH CKWCHRLDCY
301: PTSKWSC
Arabidopsis Description
RBL6RHOMBOID-like protein 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ48]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.