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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 2
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra013673.1-P Field mustard plasma membrane 88.5 98.23
CDY53134 Canola plasma membrane 95.21 94.9
AT4G23070.1 Thale cress plasma membrane 85.3 85.3
CDY47350 Canola plasma membrane 59.11 58.73
CDY49197 Canola plasma membrane 59.74 58.26
CDY67235 Canola plasma membrane 59.11 57.99
CDY45976 Canola plasma membrane 59.11 57.99
VIT_02s0025g04130.t01 Wine grape cytosol, plasma membrane, vacuole 59.11 56.4
CDY66606 Canola plasma membrane 53.04 54.61
PGSC0003DMT400007890 Potato plasma membrane 56.87 53.94
TraesCS4A01G179600.1 Wheat plasma membrane 32.91 53.65
Solyc08g080500.2.1 Tomato cytosol, golgi, plasma membrane 56.55 53.15
Zm00001d021231_P002 Maize plasma membrane 54.95 53.09
EER99221 Sorghum cytosol, peroxisome, plasma membrane 54.95 52.92
HORVU5Hr1G080690.2 Barley plasma membrane 53.67 52.34
Os09t0525900-01 Rice plasma membrane 53.99 52.32
Zm00001d006179_P002 Maize plasma membrane 54.63 52.29
TraesCS5D01G320400.1 Wheat plasma membrane 53.35 52.19
TraesCS5A01G314000.1 Wheat plasma membrane 53.35 51.86
TraesCS5B01G314900.1 Wheat plasma membrane 53.35 51.7
Zm00001d052734_P002 Maize plasma membrane 53.04 51.55
CDX70020 Canola mitochondrion, plasma membrane 53.35 51.54
Os08t0546700-01 Rice plasma membrane 53.04 51.39
Os03t0116400-01 Rice cytosol, peroxisome, plasma membrane 53.35 51.38
Zm00001d029668_P001 Maize plasma membrane 54.63 51.2
Zm00001d029667_P001 Maize plasma membrane 54.63 51.2
TraesCS7A01G269900.1 Wheat plasma membrane 52.72 51.08
TraesCS7D01G270400.1 Wheat plasma membrane 52.72 50.3
Os10t0521900-01 Rice plasma membrane 53.35 50.3
CDX98992 Canola plasma membrane 54.63 50.29
TraesCS7B01G168100.1 Wheat plasma membrane 52.4 50.0
TraesCS4D01G350300.1 Wheat plasma membrane 53.04 49.85
HORVU1Hr1G048610.3 Barley plasma membrane 51.76 49.85
TraesCS1D01G187500.1 Wheat plasma membrane 51.44 49.85
TraesCS4B01G356600.1 Wheat plasma membrane 53.04 49.7
TraesCS5A01G526000.1 Wheat plasma membrane 52.72 49.7
HORVU7Hr1G056630.1 Barley plasma membrane 51.76 49.69
EER95642 Sorghum cytosol, golgi, plasma membrane 51.76 49.69
CDX70021 Canola plasma membrane 54.95 49.57
EER94630 Sorghum cytosol, golgi, plasma membrane 53.04 49.55
TraesCS1A01G188900.1 Wheat plasma membrane 51.76 49.54
EES11282 Sorghum cytosol 53.35 49.12
Zm00001d027355_P001 Maize plasma membrane 50.48 49.07
TraesCS2D01G398500.1 Wheat plasma membrane 53.04 48.97
TraesCS2B01G419100.1 Wheat plasma membrane 52.72 48.82
TraesCS1B01G196600.1 Wheat plasma membrane 50.8 48.77
CDX81043 Canola plasma membrane 50.16 48.16
CDY60266 Canola plasma membrane 54.63 47.77
Zm00001d002632_P001 Maize plasma membrane 51.76 47.65
TraesCS2A01G401000.1 Wheat plasma membrane 51.76 47.51
CDX78286 Canola plasma membrane 49.2 47.38
CDX98993 Canola cytosol 47.28 46.54
CDX87921 Canola plasma membrane 30.99 46.19
Os04t0569300-01 Rice cytosol 49.84 45.61
CDY60552 Canola plasma membrane 43.77 43.91
CDY47879 Canola plasma membrane 52.08 42.78
CDY39528 Canola plasma membrane 52.08 42.56
CDY30844 Canola cytosol, peroxisome, plasma membrane 52.72 42.2
CDX76189 Canola cytosol, peroxisome, plasma membrane 52.72 42.2
CDY40148 Canola plasma membrane 42.17 41.9
CDY65908 Canola plasma membrane 42.17 41.9
HORVU4Hr1G086150.3 Barley plastid 51.76 41.75
CDX78204 Canola plasma membrane 51.76 41.43
CDY65838 Canola plasma membrane 51.76 41.43
CDX73525 Canola plasma membrane 50.48 39.3
HORVU2Hr1G095170.6 Barley mitochondrion 42.81 36.31
CDX87497 Canola plasma membrane 39.62 32.12
CDX88394 Canola plasma membrane 38.02 30.67
HORVU3Hr1G029090.1 Barley plastid 14.38 29.61
HORVU0Hr1G006330.1 Barley plastid 14.38 29.61
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6GO:A0A078HU84UniProt:A0A078HU84EnsemblPlants:CDY41251ProteinID:CDY41251
ProteinID:CDY41251.1GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575GO:GO:0006508
GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0016020GO:GO:0016021GO:GO:0016787
GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00072674001InterPro:IPR035952PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF65
InterPro:Peptidase_S54_rhomboidInterPro:Peptidase_S54_rhomboid_domInterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixUniParc:UPI0004EEA801
SEG:seg:::::
Description
BnaA01g12880DRhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078HU84]
Coordinates
chrLK032494:+:59555..60948
Molecular Weight (calculated)
34543.6 Da
IEP (calculated)
8.414
GRAVY (calculated)
0.509
Length
313 amino acids
Sequence
(BLAST)
001: MVSEEDPEVG GTERRVGNRG DETTPDVRWT SWLIPVVVVA NVVIFISVMY VNDCPHKSDR CLAKFLGRFS FESFKKNPLL GPSSSTLEKM GALAWGKIVN
101: KRQGWRLLTC MWLHAGVIHL LTNMFCVAFI GFRLEQQFGF VRVGTIYLVS GFCGSILSCL FLQNAISVGA SSALFGLLGA MLSELLINWT TYDNKGVALI
201: MLLVIVGVNL GLGTLPPVDN FAHIGGFLGG FLLGFLLLIH PQFDWEENGV SLVPGSIVKP KYNTCQFVLC IAASIVFVVG FVTGLVLLFR GDNLNRYCKW
301: CHKLSYSVKS QWS
Best Arabidopsis Sequence Match ( AT4G23070.1 )
(BLAST)
001: MLSTAAEEDP EGGSRETNNG GETTPDMQWR SWIIPIVVIA NVVVFVVVMY YNDCPHKSHR CLAKFLGRFS FESFKSNPLL GPSSSTLEKM GALAWGKIVH
101: KRQVWRLLTC MWLHAGVIHL LANMCCVAYI GVRLEQQFGF VRVGTIYLVS GFCGSILSCL FLEDAISVGA SSALFGLLGA MLSELLINWT TYDNKGVAIV
201: MLLVIVGVNL GLGTLPPVDN FAHIGGFFGG FLLGFLLLIH PQFEWEENQV SLMPGTIVKP KYNTCQLVLC IVASIVFVAG FTSGLVILFR GDSLNRYCKW
301: CHKLSYSSKS QWT
Arabidopsis Description
RBL7Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UXE9]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.