Factsheet for HORVU2Hr1G095170.6

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plasma membrane
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G076010.1
HORVU2Hr1G084420.1
HORVU3Hr1G026980.2
HORVU3Hr1G071060.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63120.1	HORVU2Hr1G084420.1	AT1G27300.1	21798944
AT5G07250.1	HORVU1Hr1G076010.1	AT3G16310.1	21798944
AT5G07250.1	HORVU3Hr1G026980.2	AT3G16310.1	21798944
AT5G07250.1	HORVU3Hr1G071060.1	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G419100.1	Wheat	plasma membrane	70.46	76.92
TraesCS2D01G398500.1	Wheat	plasma membrane	70.46	76.7
TraesCS2A01G401000.1	Wheat	plasma membrane	70.46	76.25
EES11282	Sorghum	cytosol	59.35	64.41
Zm00001d002632_P001	Maize	plasma membrane	58.54	63.53
TraesCS4A01G179600.1	Wheat	plasma membrane	32.79	63.02
Os04t0569300-01	Rice	cytosol	58.27	62.87
PGSC0003DMT400007890	Potato	plasma membrane	45.26	50.61
VIT_02s0025g04130.t01	Wine grape	cytosol, plasma membrane, vacuole	44.72	50.3
AT1G63120.1	Thale cress	cytosol, golgi, plasma membrane	43.09	50.16
Solyc08g080500.2.1	Tomato	cytosol, golgi, plasma membrane	44.99	49.85
HORVU1Hr1G048610.3	Barley	plasma membrane	43.9	49.85
KRH38564	Soybean	plasma membrane	43.63	48.79
KRH09112	Soybean	plasma membrane	43.36	48.63
CDY45976	Canola	plasma membrane	42.01	48.59
Bra026997.1-P	Field mustard	cytosol, golgi, plasma membrane	42.01	48.59
Bra019783.1-P	Field mustard	plasma membrane	39.84	48.36
CDY66606	Canola	plasma membrane	39.84	48.36
CDY67235	Canola	plasma membrane	41.73	48.28
CDY47350	Canola	plasma membrane	41.19	48.25
Solyc03g026080.2.1	Tomato	plasma membrane	41.46	48.11
PGSC0003DMT400037141	Potato	cytosol, golgi, plasma membrane	41.46	48.11
Bra027622.1-P	Field mustard	plasma membrane	40.92	48.09
HORVU5Hr1G080690.2	Barley	plasma membrane	41.73	47.98
CDY49197	Canola	plasma membrane	41.46	47.66
VIT_16s0100g00640.t01	Wine grape	plasma membrane	41.73	47.38
HORVU7Hr1G056630.1	Barley	plasma membrane	41.73	47.24
Bra013673.1-P	Field mustard	plasma membrane	35.77	46.81
AT1G12750.4	Thale cress	plasma membrane	38.75	46.58
KRG91456	Soybean	cytosol, golgi, plasma membrane	41.46	46.5
KRH35359	Soybean	cytosol, golgi, plasma membrane	40.92	45.76
Bra009279.1-P	Field mustard	cytosol, peroxisome, plasma membrane	42.01	44.67
CDX70021	Canola	plasma membrane	41.73	44.38
Bra005930.1-P	Field mustard	plasma membrane	39.02	44.31
CDY60266	Canola	plasma membrane	42.82	44.13
CDX98992	Canola	plasma membrane	40.65	44.12
CDX78286	Canola	plasma membrane	38.75	44.0
CDX81043	Canola	plasma membrane	38.75	43.87
AT5G07250.1	Thale cress	plasma membrane	40.92	43.64
HORVU4Hr1G086150.3	Barley	plastid	45.8	43.56
CDY53134	Canola	plasma membrane	36.86	43.31
AT4G23070.1	Thale cress	plasma membrane	36.59	43.13
CDY41251	Canola	plasma membrane	36.31	42.81
CDX70020	Canola	mitochondrion, plasma membrane	36.59	41.67
CDX98993	Canola	cytosol	33.33	38.68
HORVU4Hr1G027850.1	Barley	peroxisome	38.21	37.2
Bra009280.1-P	Field mustard	cytosol	36.31	35.92
HORVU3Hr1G029090.1	Barley	plastid	13.82	33.55
HORVU0Hr1G006330.1	Barley	plastid	13.82	33.55

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	UniProt:A0A287J0Q4	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252
GO:GO:0005575	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:HORVU2Hr1G095170	EnsemblPlants:HORVU2Hr1G095170.6	InterPro:IPR035952
PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF31	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf
SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI000B468136	SEG:seg	:	:

Description

Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A287J0Q4]

Coordinates

chrchr2H:+:668833766..668835603

Molecular Weight (calculated)

39432.8 Da

IEP (calculated)

9.826

GRAVY (calculated)

0.252

Length

369 amino acids

Sequence
(BLAST)

001: GLRSSSPRPS LSPLLSSQRE TIALAAPIER ANSQGGRSWW SIEAMSNPDV EAAGPARATT GIKPPPGRYN AGGGGGGQHA PVTPFYYGQE AERERQHHTW
101: LVPLVVLANV AMFIVVMYYN DCPRNGRGGA AADCVGRGVL RRFSFQPLKE NPLFGPSSAT LGKYGGLDRY KVVHGNEAWR LETSTWLHAG LIHLGANMIS
201: LIFVGVRLEQ QFGFWKVGLV YLFSGLGGSV LSVLFIRNGV SVGASGALFG LLGAMLSELI TNWTIYTNRL AAMANLIIIA AINLALGILP HVDNFAHIGG
301: FLTGFLLGIV LLVLATTIAA GATTLPASRR RTGSVTTEKR KEETTAVETN VLAIEAIASV WPFIYFCAV

Best Arabidopsis Sequence Match ( AT1G12750.1 )
(BLAST)

001: MRSRDMERGR KHRGDTQWTA WLTPTIVVAN VSIFIVVMYT NDCPKTTTGA NGDCVAKLLR RFSFQPLREN PFLGPSSSTL EKLGALDWKK VVQGNEKWRL
101: ITAMWLHAGI IHLVMNMFDV IIFGIRLEQQ FGFIRIGLIY LISGFGGSIL SALFLQKSIS VGASGALLGL MGAMLSELLT NWTIYKSKLC ALLSFLFIIA
201: INLAIGLLPW VDNFAHIGGL LTGFCLGFIL LMQPQSGWEE FRNSSQYGAR ARSKYNPCQY VLFFVAAVLV VAGLTVGLVM LFDGENGNKH CKWCHRLDCY
301: PTSKWSC

Arabidopsis Description

RBL6RHOMBOID-like protein 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ48]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.