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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • mitochondrion 1
  • plasma membrane 4
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 3
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:mitochondrion, secretory
iPSORT:mitochondrion
MultiLoc:plasma membrane
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G340600.1
TraesCS1D01G342600.1
TraesCS2A01G346700.1
TraesCS2B01G365000.1
TraesCS2D01G345400.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G63120.1 TraesCS2A01G346700.1 AT1G27300.1 21798944
AT1G63120.1 TraesCS2B01G365000.1 AT1G27300.1 21798944
AT1G63120.1 TraesCS2D01G345400.1 AT1G27300.1 21798944
AT5G07250.1 TraesCS1A01G340600.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS1D01G342600.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3A01G274800.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3A01G313000.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3B01G158900.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3B01G308400.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3D01G141300.1 AT3G16310.1 21798944
AT5G07250.1 TraesCS3D01G274500.1 AT3G16310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2A01G401000.1 Wheat plasma membrane 92.71 52.2
TraesCS2B01G419100.1 Wheat plasma membrane 91.67 52.07
TraesCS2D01G398500.1 Wheat plasma membrane 91.67 51.92
Zm00001d002632_P001 Maize plasma membrane 81.25 45.88
EES11282 Sorghum cytosol 80.73 45.59
Os04t0569300-01 Rice cytosol 73.44 41.23
AT1G63120.1 Thale cress cytosol, golgi, plasma membrane 61.98 37.54
PGSC0003DMT400037141 Potato cytosol, golgi, plasma membrane 61.46 37.11
KRH09112 Soybean plasma membrane 63.54 37.08
TraesCS1A01G188900.1 Wheat plasma membrane 63.02 37.0
VIT_02s0025g04130.t01 Wine grape cytosol, plasma membrane, vacuole 63.02 36.89
Solyc03g026080.2.1 Tomato plasma membrane 60.94 36.79
PGSC0003DMT400007890 Potato plasma membrane 63.02 36.67
CDY47350 Canola plasma membrane 59.9 36.51
TraesCS5A01G314000.1 Wheat plasma membrane 60.94 36.34
Bra027622.1-P Field mustard plasma membrane 59.38 36.31
KRG91456 Soybean cytosol, golgi, plasma membrane 61.98 36.17
KRH38564 Soybean plasma membrane 61.98 36.06
KRH35359 Soybean cytosol, golgi, plasma membrane 61.98 36.06
Bra026997.1-P Field mustard cytosol, golgi, plasma membrane 59.9 36.05
CDY45976 Canola plasma membrane 59.9 36.05
CDY67235 Canola plasma membrane 59.9 36.05
Solyc08g080500.2.1 Tomato cytosol, golgi, plasma membrane 62.5 36.04
TraesCS7A01G269900.1 Wheat plasma membrane 60.42 35.91
CDX78286 Canola plasma membrane 60.42 35.69
CDY49197 Canola plasma membrane 59.38 35.51
AT1G12750.4 Thale cress plasma membrane 56.77 35.5
Bra005930.1-P Field mustard plasma membrane 59.9 35.38
CDY66606 Canola plasma membrane 55.73 35.2
Bra019783.1-P Field mustard plasma membrane 55.73 35.2
VIT_16s0100g00640.t01 Wine grape plasma membrane 59.38 35.08
CDX81043 Canola plasma membrane 58.85 34.66
AT5G07250.1 Thale cress plasma membrane 61.46 34.1
TraesCS5A01G526000.1 Wheat plasma membrane 58.85 34.04
TraesCS4A01G176100.1 Wheat plasma membrane 54.69 33.12
CDX98992 Canola plasma membrane 58.33 32.94
CDY41251 Canola plasma membrane 53.65 32.91
Bra009279.1-P Field mustard cytosol, peroxisome, plasma membrane 59.38 32.85
CDY53134 Canola plasma membrane 53.65 32.8
HORVU2Hr1G095170.6 Barley mitochondrion 63.02 32.79
CDX70020 Canola mitochondrion, plasma membrane 55.21 32.72
AT4G23070.1 Thale cress plasma membrane 53.12 32.59
CDX70021 Canola plasma membrane 58.85 32.56
Bra013673.1-P Field mustard plasma membrane 46.35 31.56
CDY60266 Canola plasma membrane 57.81 31.01
Bra009280.1-P Field mustard cytosol 55.21 28.42
TraesCS3A01G071500.1 Wheat plasma membrane 54.69 28.07
CDX98993 Canola cytosol 44.79 27.04
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575
GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016787
GO:GO:0019538InterPro:IPR035952PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF31InterPro:Peptidase_S54_rhomboid
InterPro:Peptidase_S54_rhomboid_domInterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixEnsemblPlantsGene:TraesCS4A01G179600EnsemblPlants:TraesCS4A01G179600.1
SEG:seg:::::
Description
No Description!
Coordinates
chr4A:+:453299867..453307202
Molecular Weight (calculated)
20716.0 Da
IEP (calculated)
10.328
GRAVY (calculated)
0.836
Length
192 amino acids
Sequence
(BLAST)
001: MISLIFVGVR LEQQFGFWKV GLVYLFSGLG GSVLSVLFIR NGVSVGASCA LFGLLGAMLS ELITNWTIYT NRLAAMANLI IIAAINLALG ILPHVDNFAH
101: IGGFLTGFLL GFVLLIQPRF GWLEQPFGGK TKSKYTACQI VLLVVALLLA IAGLAVGLLM VFRGVNGNDH CSWCHYLPAS RRRTGSVTTN KK
Best Arabidopsis Sequence Match ( AT1G12750.1 )
(BLAST)
001: MRSRDMERGR KHRGDTQWTA WLTPTIVVAN VSIFIVVMYT NDCPKTTTGA NGDCVAKLLR RFSFQPLREN PFLGPSSSTL EKLGALDWKK VVQGNEKWRL
101: ITAMWLHAGI IHLVMNMFDV IIFGIRLEQQ FGFIRIGLIY LISGFGGSIL SALFLQKSIS VGASGALLGL MGAMLSELLT NWTIYKSKLC ALLSFLFIIA
201: INLAIGLLPW VDNFAHIGGL LTGFCLGFIL LMQPQSGWEE FRNSSQYGAR ARSKYNPCQY VLFFVAAVLV VAGLTVGLVM LFDGENGNKH CKWCHRLDCY
301: PTSKWSC
Arabidopsis Description
RBL6RHOMBOID-like protein 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ48]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.