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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plastid 1
  • mitochondrion 1
  • plasma membrane 5
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plasma membrane
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra019783.1-P Field mustard plasma membrane 99.34 99.34
CDY60266 Canola plasma membrane 96.05 81.56
AT1G12750.4 Thale cress plasma membrane 75.0 74.27
CDY47350 Canola plasma membrane 65.79 63.49
CDY45976 Canola plasma membrane 66.45 63.32
CDY67235 Canola plasma membrane 66.12 63.01
CDY49197 Canola plasma membrane 65.79 62.31
Os09t0525900-01 Rice plasma membrane 60.2 56.66
TraesCS5D01G320400.1 Wheat plasma membrane 59.21 56.25
Zm00001d021231_P002 Maize plasma membrane 59.87 56.17
VIT_02s0025g04130.t01 Wine grape cytosol, plasma membrane, vacuole 60.53 56.1
HORVU5Hr1G080690.2 Barley plasma membrane 59.21 56.07
EER99221 Sorghum cytosol, peroxisome, plasma membrane 59.87 56.0
TraesCS5A01G314000.1 Wheat plasma membrane 59.21 55.9
TraesCS4A01G179600.1 Wheat plasma membrane 35.2 55.73
TraesCS5B01G314900.1 Wheat plasma membrane 59.21 55.73
Zm00001d006179_P002 Maize plasma membrane 59.54 55.35
Os10t0521900-01 Rice plasma membrane 60.2 55.12
Os08t0546700-01 Rice plasma membrane 58.55 55.11
TraesCS7A01G269900.1 Wheat plasma membrane 57.89 54.49
Zm00001d052734_P002 Maize plasma membrane 57.57 54.35
TraesCS1A01G188900.1 Wheat plasma membrane 58.22 54.13
HORVU7Hr1G056630.1 Barley plasma membrane 57.89 53.99
PGSC0003DMT400007890 Potato plasma membrane 58.55 53.94
TraesCS1D01G187500.1 Wheat plasma membrane 57.24 53.87
TraesCS1B01G196600.1 Wheat plasma membrane 57.57 53.68
TraesCS7B01G168100.1 Wheat plasma membrane 57.89 53.66
Os03t0116400-01 Rice cytosol, peroxisome, plasma membrane 57.24 53.54
CDX98992 Canola plasma membrane 59.87 53.53
TraesCS7D01G270400.1 Wheat plasma membrane 57.57 53.35
Zm00001d029667_P001 Maize plasma membrane 58.55 53.29
Zm00001d029668_P001 Maize plasma membrane 58.55 53.29
HORVU1Hr1G048610.3 Barley plasma membrane 56.91 53.23
Solyc08g080500.2.1 Tomato cytosol, golgi, plasma membrane 58.22 53.15
CDY41251 Canola plasma membrane 54.61 53.04
CDX70021 Canola plasma membrane 59.87 52.45
EER94630 Sorghum cytosol, golgi, plasma membrane 57.57 52.24
CDY53134 Canola plasma membrane 53.95 52.23
CDX70020 Canola mitochondrion, plasma membrane 54.61 51.23
TraesCS2B01G419100.1 Wheat plasma membrane 56.25 50.59
TraesCS2D01G398500.1 Wheat plasma membrane 56.25 50.44
TraesCS2A01G401000.1 Wheat plasma membrane 56.25 50.15
TraesCS5A01G526000.1 Wheat plasma membrane 54.61 50.0
TraesCS4D01G350300.1 Wheat plasma membrane 54.28 49.55
EES11282 Sorghum cytosol 55.26 49.41
TraesCS4B01G356600.1 Wheat plasma membrane 54.28 49.4
Zm00001d027355_P001 Maize plasma membrane 52.3 49.38
EER95642 Sorghum cytosol, golgi, plasma membrane 52.63 49.08
CDX81043 Canola plasma membrane 52.3 48.77
CDX78286 Canola plasma membrane 51.97 48.62
Os04t0569300-01 Rice cytosol 53.95 47.95
Zm00001d002632_P001 Maize plasma membrane 53.29 47.65
CDY47879 Canola plasma membrane 57.89 46.19
CDY39528 Canola plasma membrane 57.24 45.43
CDX98993 Canola cytosol 47.04 44.97
CDX87921 Canola plasma membrane 29.93 43.33
CDY60552 Canola plasma membrane 43.75 42.63
HORVU4Hr1G086150.3 Barley plastid 53.95 42.27
CDY40148 Canola plasma membrane 43.75 42.22
CDX76189 Canola cytosol, peroxisome, plasma membrane 53.95 41.94
CDY30844 Canola cytosol, peroxisome, plasma membrane 53.95 41.94
CDY65908 Canola plasma membrane 43.42 41.9
CDX78204 Canola plasma membrane 52.96 41.18
CDY65838 Canola plasma membrane 52.96 41.18
HORVU2Hr1G095170.6 Barley mitochondrion 48.36 39.84
CDX73525 Canola plasma membrane 52.63 39.8
HORVU3Hr1G029090.1 Barley plastid 17.43 34.87
HORVU0Hr1G006330.1 Barley plastid 17.43 34.87
CDX87497 Canola plasma membrane 39.47 31.09
CDX88394 Canola plasma membrane 37.83 29.64
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6GO:A0A078JLD1UniProt:A0A078JLD1EnsemblPlants:CDY66606ProteinID:CDY66606
ProteinID:CDY66606.1GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575GO:GO:0006508
GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0016020GO:GO:0016021GO:GO:0016787
GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00054637001InterPro:IPR035952PFAM:PF01694PFscan:PS51257PANTHER:PTHR22936
PANTHER:PTHR22936:SF63InterPro:Peptidase_S54_rhomboidInterPro:Peptidase_S54_rhomboid_domInterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelix
UniParc:UPI0004EEB32ESEG:seg::::
Description
BnaA06g38080DRhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078JLD1]
Coordinates
chrLK035354:-:11796..13459
Molecular Weight (calculated)
33233.3 Da
IEP (calculated)
9.118
GRAVY (calculated)
0.557
Length
304 amino acids
Sequence
(BLAST)
001: MPSSKNGGNN TQWTAWLTPV IVLACIAVFI VVMFINDCPK TVAGANGDCV PRFLRRFSFQ PLRENPLLGP SSSTLEKMGA LDRSKVVNGN EKWRLVTSMW
101: LHAGVVHLIV NMFNVVLIGF RLEKQFGFIR MGLIYLIAGL GGSILSALFL QNSISVGASG ALLGLLGAML SELLTNWTIY ANKLAALFTI LFIVAIDLAI
201: GLLPWVDNFA HIGGFLTGFL LGFVILVRPQ YGWEESGNSP SQYGAPRARS KYNPCQYLLF FIAAVLVVGG LAVGIVMLLK GENGNKLCKW CHQLDCIETS
301: RWTC
Best Arabidopsis Sequence Match ( AT1G12750.1 )
(BLAST)
001: MRSRDMERGR KHRGDTQWTA WLTPTIVVAN VSIFIVVMYT NDCPKTTTGA NGDCVAKLLR RFSFQPLREN PFLGPSSSTL EKLGALDWKK VVQGNEKWRL
101: ITAMWLHAGI IHLVMNMFDV IIFGIRLEQQ FGFIRIGLIY LISGFGGSIL SALFLQKSIS VGASGALLGL MGAMLSELLT NWTIYKSKLC ALLSFLFIIA
201: INLAIGLLPW VDNFAHIGGL LTGFCLGFIL LMQPQSGWEE FRNSSQYGAR ARSKYNPCQY VLFFVAAVLV VAGLTVGLVM LFDGENGNKH CKWCHRLDCY
301: PTSKWSC
Arabidopsis Description
RBL6RHOMBOID-like protein 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ48]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.