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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • cytosol 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:cytosol
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY30844 Canola cytosol, peroxisome, plasma membrane 98.98 98.98
CDX78204 Canola plasma membrane 92.33 92.33
CDY65838 Canola plasma membrane 92.07 92.07
Bra014862.1-P Field mustard cytosol 97.19 89.62
AT3G53780.2 Thale cress plasma membrane 89.0 88.32
CDX73525 Canola plasma membrane 90.79 88.31
TraesCS4A01G176100.1 Wheat plasma membrane 47.57 58.68
Solyc09g010880.2.1 Tomato extracellular 56.27 57.44
PGSC0003DMT400022764 Potato plasma membrane 56.52 57.25
KRH66050 Soybean plasma membrane 55.75 56.62
CDY47350 Canola plasma membrane 45.52 56.51
VIT_08s0007g00470.t01 Wine grape plasma membrane 55.5 55.93
KRG99546 Soybean plasma membrane 54.73 55.73
CDY49197 Canola plasma membrane 45.27 55.14
CDY67235 Canola plasma membrane 44.76 54.86
CDY45976 Canola plasma membrane 44.25 54.23
CDY66606 Canola plasma membrane 41.94 53.95
Os01t0147300-01 Rice plasma membrane 28.13 53.92
KRG99955 Soybean endoplasmic reticulum, peroxisome, plasma membrane 54.22 53.54
TraesCS4D01G136600.2 Wheat plasma membrane 51.66 53.16
HORVU4Hr1G027850.1 Barley peroxisome 51.41 53.03
CDY53134 Canola plasma membrane 42.46 52.87
CDY41251 Canola plasma membrane 42.2 52.72
TraesCS4B01G141600.1 Wheat plasma membrane 51.66 52.47
KRH49106 Soybean plasma membrane 35.81 52.24
CDX70020 Canola mitochondrion, plasma membrane 43.22 52.16
Os11t0704800-01 Rice plasma membrane 49.36 51.6
CDY47879 Canola plasma membrane 49.87 51.18
CDX98992 Canola plasma membrane 44.5 51.18
CDX70021 Canola plasma membrane 45.01 50.72
CDY39528 Canola plasma membrane 49.62 50.65
TraesCS3D01G070700.1 Wheat mitochondrion, plasma membrane 39.39 50.49
CDX81043 Canola plasma membrane 41.43 49.69
CDX78286 Canola plasma membrane 40.92 49.23
CDX87921 Canola plasma membrane 26.34 49.05
TraesCS3B01G085300.1 Wheat plasma membrane 46.55 48.66
TraesCS3A01G071500.1 Wheat plasma membrane 46.55 48.66
Zm00001d048606_P001 Maize cytosol, nucleus, plasma membrane 49.62 48.38
CDY60552 Canola plasma membrane 38.11 47.76
CDX98993 Canola cytosol 38.11 46.86
EES00318 Sorghum golgi, peroxisome, plasma membrane 50.13 46.56
CDY65908 Canola plasma membrane 37.34 46.35
CDY40148 Canola plasma membrane 37.08 46.03
CDY60266 Canola plasma membrane 41.69 45.53
OQU84103 Sorghum golgi, peroxisome, plasma membrane, plastid 50.13 45.48
Zm00001d039870_P002 Maize plasma membrane 51.41 40.04
CDX87497 Canola plasma membrane 35.81 36.27
CDX88394 Canola plasma membrane 34.78 35.05
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6GO:A0A078CJH0EnsemblPlants:CDX76189ProteinID:CDX76189ProteinID:CDX76189.1
GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575GO:GO:0006508GO:GO:0008150
GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00126494001
InterPro:IPR035952PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF46InterPro:Peptidase_S54_rhomboidInterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixUniParc:UPI0004EDC0E1SEG:seg:
Description
BnaA04g04530D
Coordinates
chrLK031806:+:1702672..1704631
Molecular Weight (calculated)
43288.8 Da
IEP (calculated)
8.833
GRAVY (calculated)
0.204
Length
391 amino acids
Sequence
(BLAST)
001: MGEKESETAP IWGRTRQSEN NNIHPMDVES SALSEQHRSQ NRSRGSSYEE RGRGVKEFRS WFSWLIPCFV IANVVVFVIT MYVNNCPKKS GDCFAGFLGR
101: FSFQSTRENP LLGPSSLTLR TMGGLDVKKV VEGDEGWRLL SCNWLHGGVV HLLVNMLTLL FIGMRMEREF GFIRIGLLYL ISGFGGSILS ALFLRSNISV
201: GASGAVFGLL GGMLSEIFIN WTIYTNKVVT IITLVLIVAV NLGLGVLPGV DNFAHIGGFA TGFLLGFVLL IRPHYGWINQ RSDPAAKPHK YNICQAILWT
301: VSLLLLLGWF IAGLISLFNN VDGNKHCSWC HYLSCVPTSR WSCNREPASC TTTQLGNQLS MTCLRNGKSG SYILANPSDS RINSLCVQLC R
Best Arabidopsis Sequence Match ( AT3G53780.2 )
(BLAST)
001: MGEKDSETAP IWGKTRERER SNNNNIQPMD LESSSSVSGQ QRSLTQSRSS YEERGRGVKE FRSWFPWLIP CFVVANVAVF VITMYVNNCP KKSGDCFADF
101: LGRFSFQNTR ENPLLGPSSL TLQTMGGLDV KKVVKGDEGW RLLSCNWLHG GVVHLLMNML TLLFIGIRME REFGFIRIGL LYLISGFGGS ILSALFLRSN
201: ISVGASGAVF GLLGGMLSEI FINWTIYSNK VVTIVTLVLI VAVNLGLGVL PGVDNFAHIG GFATGFLLGF VLLIRPHYGW INQRNGPGAK PHRFKIYQGI
301: LWTISLLILV AGFIVGLISL FNNVDGNEHC SWCHYLSCVP TSKWSCNREP ASCTTTQLGN QLSMTCLRNG KSASYILANP SDSRINSLCV QLCR
Arabidopsis Description
RBL4RHOMBOID-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:F4JBM4]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.