Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • extracellular 1
  • golgi 1
  • plasma membrane 2
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70995
CDX88803
CDX92368
CDX97739
CDY09128
CDY30157
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G07250.1 CDX97739 AT3G16310.1 21798944
AT5G07250.1 CDY30157 AT3G16310.1 21798944
AT5G07250.1 CDX70995 AT5G22290.1 21798944
AT5G07250.1 CDX88803 AT5G22290.1 21798944
AT5G07250.1 CDX92368 AT5G22290.1 21798944
AT5G07250.1 CDY09128 AT5G22290.1 21798944
AT5G07250.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX70020 Canola mitochondrion, plasma membrane 83.33 81.79
Bra009280.1-P Field mustard cytosol 86.79 73.99
CDX98992 Canola plasma membrane 75.16 70.29
CDX70021 Canola plasma membrane 76.42 70.03
AT5G07250.1 Thale cress plasma membrane 70.13 64.45
CDX78286 Canola plasma membrane 64.78 63.38
CDX81043 Canola plasma membrane 63.52 61.96
Solyc03g026080.2.1 Tomato plasma membrane 56.29 56.29
PGSC0003DMT400037141 Potato cytosol, golgi, plasma membrane 56.29 56.29
VIT_16s0100g00640.t01 Wine grape plasma membrane 56.92 55.69
KRH09112 Soybean plasma membrane 56.29 54.41
KRH38564 Soybean plasma membrane 56.29 54.24
KRG91456 Soybean cytosol, golgi, plasma membrane 55.97 54.1
KRH35359 Soybean cytosol, golgi, plasma membrane 55.35 53.33
GSMUA_Achr11P... Banana cytosol 56.29 53.27
TraesCS5D01G320400.1 Wheat plasma membrane 52.52 52.19
Os08t0546700-01 Rice plasma membrane 52.83 52.01
TraesCS5A01G314000.1 Wheat plasma membrane 52.52 51.86
Zm00001d052734_P002 Maize plasma membrane 52.52 51.86
HORVU5Hr1G080690.2 Barley plasma membrane 52.2 51.71
TraesCS5B01G314900.1 Wheat plasma membrane 52.52 51.7
CDY47350 Canola plasma membrane 50.94 51.43
Os03t0116400-01 Rice cytosol, peroxisome, plasma membrane 52.52 51.38
CDY45976 Canola plasma membrane 51.26 51.1
Os09t0525900-01 Rice plasma membrane 51.89 51.08
EER99221 Sorghum cytosol, peroxisome, plasma membrane 52.2 51.08
Zm00001d006179_P002 Maize plasma membrane 52.52 51.07
Zm00001d021231_P002 Maize plasma membrane 51.89 50.93
HORVU7Hr1G056630.1 Barley plasma membrane 51.89 50.61
EER95642 Sorghum cytosol, golgi, plasma membrane 51.89 50.61
Os10t0521900-01 Rice plasma membrane 52.83 50.6
CDY49197 Canola plasma membrane 50.94 50.47
TraesCS7D01G270400.1 Wheat plasma membrane 51.89 50.3
TraesCS7B01G168100.1 Wheat plasma membrane 51.89 50.3
CDY67235 Canola plasma membrane 50.31 50.16
TraesCS7A01G269900.1 Wheat plasma membrane 50.94 50.15
Zm00001d029668_P001 Maize plasma membrane 51.26 48.8
Zm00001d029667_P001 Maize plasma membrane 51.26 48.8
Zm00001d027355_P001 Maize plasma membrane 49.37 48.76
EER94630 Sorghum cytosol, golgi, plasma membrane 51.26 48.66
TraesCS5A01G526000.1 Wheat plasma membrane 50.63 48.49
TraesCS1D01G187500.1 Wheat plasma membrane 48.43 47.68
TraesCS1B01G196600.1 Wheat plasma membrane 48.74 47.55
TraesCS4D01G350300.1 Wheat plasma membrane 49.69 47.45
TraesCS4B01G356600.1 Wheat plasma membrane 49.69 47.31
CDY41251 Canola plasma membrane 46.54 47.28
CDX87921 Canola plasma membrane 31.13 47.14
CDY53134 Canola plasma membrane 46.54 47.13
HORVU1Hr1G048610.3 Barley plasma membrane 48.11 47.08
CDY66606 Canola plasma membrane 44.97 47.04
EES11282 Sorghum cytosol 50.0 46.76
Os04t0569300-01 Rice cytosol 49.69 46.2
TraesCS1A01G188900.1 Wheat plasma membrane 47.48 46.18
Zm00001d002632_P001 Maize plasma membrane 49.37 46.18
TraesCS2B01G419100.1 Wheat plasma membrane 48.11 45.27
TraesCS2D01G398500.1 Wheat plasma membrane 48.11 45.13
TraesCS4A01G179600.1 Wheat plasma membrane 27.04 44.79
TraesCS2A01G401000.1 Wheat plasma membrane 47.8 44.57
CDY47879 Canola plasma membrane 50.31 41.99
CDY60266 Canola plasma membrane 47.17 41.9
CDY39528 Canola plasma membrane 50.31 41.78
HORVU4Hr1G086150.3 Barley plastid 49.06 40.21
CDY65838 Canola plasma membrane 48.74 39.64
CDX78204 Canola plasma membrane 48.74 39.64
CDX73525 Canola plasma membrane 48.74 38.56
CDY30844 Canola cytosol, peroxisome, plasma membrane 47.17 38.36
CDX76189 Canola cytosol, peroxisome, plasma membrane 46.86 38.11
CDY60552 Canola plasma membrane 37.11 37.82
CDY40148 Canola plasma membrane 37.11 37.46
CDY65908 Canola plasma membrane 36.79 37.14
HORVU2Hr1G095170.6 Barley mitochondrion 38.68 33.33
HORVU3Hr1G029090.1 Barley plastid 12.58 26.32
HORVU0Hr1G006330.1 Barley plastid 12.58 26.32
CDX87497 Canola plasma membrane 31.76 26.17
CDX88394 Canola plasma membrane 31.13 25.52
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6GO:A0A078EI31EnsemblPlants:CDX98993ProteinID:CDX98993ProteinID:CDX98993.1
GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575GO:GO:0006508GO:GO:0008150
GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00107113001
InterPro:IPR035952PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF65InterPro:Peptidase_S54_rhomboidInterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixUniParc:UPI0004EDFA20SEG:seg:
Description
BnaC09g48420D
Coordinates
chrLK031907:+:1047211..1048627
Molecular Weight (calculated)
35699.6 Da
IEP (calculated)
7.764
GRAVY (calculated)
0.188
Length
318 amino acids
Sequence
(BLAST)
001: MSVVDDMENQ MPAKHHQGIG SRGGEQDGLG PSPRPVVPPL VYAEFGDDDE LSPQWTSWLI PMFVVANVIV FFATMSVNNC PQHSKHCVAR FLGRFSFEHL
101: RDNPLFGPSS LTLEKLGSLD WYRVVEKHQA WRLLTCIWLH AGVIHLAINM LSIVFMGTRL EQQFGFVRIG VIYIMSGMGG SILSSLFIRN DISVGASGAL
201: FGLLGSMLSE LLTNWTIYSN KIAAFLTLLC CHCDKPGHWE STLHQVVRKT AHMPQGRRLT SKYKPYQYIL WLLSLALLIA GFVVALVLLF KGEDGNDHCH
301: WCRYLSCIPT SRWSCDSV
Best Arabidopsis Sequence Match ( AT5G07250.2 )
(BLAST)
001: MAVGDDDLEN RMSAKDRGIG SRGGDRNRIG PPPLPVALSS STEFGDNALS SRWTSWLVPM FVVANVAVFV VAMFVNNCPN HFESHRLRGH CVAKFLGRLS
101: FEPLRTNPLF GPSSHTLEKL GALEWSKVVE KKEGWRLLTC IWLHAGVIHL GANMLSLVFI GIRLEQQFGF VRIGVIYLLS GIGGSVLSSL FIRNSISVGA
201: SGALFGLLGS MLSELFTNWT IYSNKFKWLA REHMPQGTPL RYKYKTYQYL LWLLSLVLLI AGFVVALLML FRGENGNDHC RWCHYLRCVP TSSWRCDDV
Arabidopsis Description
RBL3Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UBV1]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.