Factsheet for Zm00001d029667_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

golgi 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, mitochondrion, plasma membrane
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008871_P001
Zm00001d010783_P001
Zm00001d016570_P001
Zm00001d038803_P001
Zm00001d050563_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63120.1	Zm00001d016570_P001	AT1G27300.1	21798944
AT1G63120.1	Zm00001d050563_P001	AT1G27300.1	21798944
AT5G07250.1	Zm00001d008871_P001	AT3G16310.1	21798944
AT5G07250.1	Zm00001d010783_P001	AT3G16310.1	21798944
AT5G07250.1	Zm00001d038803_P001	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029668_P001	Maize	plasma membrane	100.0	100.0
EER94630	Sorghum	cytosol, golgi, plasma membrane	91.92	91.64
Os10t0521900-01	Rice	plasma membrane	83.83	84.34
TraesCS1B01G196600.1	Wheat	plasma membrane	78.44	80.37
TraesCS1D01G187500.1	Wheat	plasma membrane	77.54	80.19
TraesCS1A01G188900.1	Wheat	plasma membrane	77.84	79.51
HORVU1Hr1G048610.3	Barley	plasma membrane	77.25	79.38
Zm00001d027355_P001	Maize	plasma membrane	66.17	68.63
Solyc03g026080.2.1	Tomato	plasma membrane	62.87	66.04
PGSC0003DMT400037141	Potato	cytosol, golgi, plasma membrane	62.87	66.04
VIT_02s0025g04130.t01	Wine grape	cytosol, plasma membrane, vacuole	63.77	64.94
KRH09112	Soybean	plasma membrane	63.47	64.44
PGSC0003DMT400007890	Potato	plasma membrane	63.47	64.24
Solyc08g080500.2.1	Tomato	cytosol, golgi, plasma membrane	63.77	63.96
Zm00001d052734_P002	Maize	plasma membrane	61.38	63.66
KRH38564	Soybean	plasma membrane	62.87	63.64
Zm00001d021231_P002	Maize	plasma membrane	61.38	63.27
AT1G63120.1	Thale cress	cytosol, golgi, plasma membrane	59.58	62.78
CDY45976	Canola	plasma membrane	59.88	62.7
Bra026997.1-P	Field mustard	cytosol, golgi, plasma membrane	59.88	62.7
KRG91456	Soybean	cytosol, golgi, plasma membrane	61.68	62.61
VIT_16s0100g00640.t01	Wine grape	plasma membrane	60.78	62.46
CDY67235	Canola	plasma membrane	59.58	62.38
KRH35359	Soybean	cytosol, golgi, plasma membrane	61.38	62.12
Zm00001d006179_P002	Maize	plasma membrane	60.78	62.08
CDY47350	Canola	plasma membrane	58.08	61.59
Bra027622.1-P	Field mustard	plasma membrane	57.48	61.15
CDY49197	Canola	plasma membrane	58.08	60.44
CDX98992	Canola	plasma membrane	61.38	60.29
CDX70021	Canola	plasma membrane	62.57	60.23
Bra009279.1-P	Field mustard	cytosol, peroxisome, plasma membrane	62.57	60.23
Bra005930.1-P	Field mustard	plasma membrane	58.38	60.0
AT5G07250.1	Thale cress	plasma membrane	61.98	59.83
CDX78286	Canola	plasma membrane	58.08	59.69
Bra019783.1-P	Field mustard	plasma membrane	53.29	58.55
CDY66606	Canola	plasma membrane	53.29	58.55
CDX81043	Canola	plasma membrane	56.89	58.28
AT1G12750.4	Thale cress	plasma membrane	52.99	57.65
Zm00001d002632_P001	Maize	plasma membrane	58.68	57.65
CDX70020	Canola	mitochondrion, plasma membrane	54.79	56.48
CDY41251	Canola	plasma membrane	51.2	54.63
CDY53134	Canola	plasma membrane	51.2	54.46
Bra013673.1-P	Field mustard	plasma membrane	45.81	54.26
AT4G23070.1	Thale cress	plasma membrane	50.3	53.67
CDY60266	Canola	plasma membrane	55.39	51.68
CDX98993	Canola	cytosol	48.8	51.26
Bra009280.1-P	Field mustard	cytosol	54.49	48.79
Zm00001d048606_P001	Maize	cytosol, nucleus, plasma membrane	52.99	44.14
HORVU3Hr1G029090.1	Barley	plastid	20.06	44.08
HORVU0Hr1G006330.1	Barley	plastid	20.06	44.08
Zm00001d039870_P002	Maize	plasma membrane	55.69	37.05

Protein Annotations

Gene3D:1.20.1540.10	EntrezGene:109939190	MapMan:19.4.2.6	UniProt:A0A1D6K700	GO:GO:0003674	GO:GO:0003824
GO:GO:0004252	GO:GO:0005575	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	InterPro:IPR035952	ProteinID:ONL99337.1
ProteinID:ONL99338.1	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF63	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sf	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI000221BCE8	EnsemblPlantsGene:Zm00001d029667	EnsemblPlants:Zm00001d029667_P001
EnsemblPlants:Zm00001d029667_T001	SEG:seg	:	:	:	:

Description

Membrane protein

Coordinates

chr1:+:81894379..81896612

Molecular Weight (calculated)

36227.6 Da

IEP (calculated)

9.747

GRAVY (calculated)

0.445

Length

334 amino acids

Sequence
(BLAST)

001: MAAARYDVEK GGRNNGDGKP SPPPPGHLYP QRDGEREWVP WLVPLVVAVN IVLFAVAMYV NNCPAHAASS RRGGAGSCVA RGFLHRFSFQ PLSENPLLGP
101: SSATLQKLGA LVWDKVVREH QGWRLVTCIW LHAGVAHLLA NMISLVLIGL RLEQQFGYVR VGIIYLVSGV GGSVLSSLFI RNNISVGASG ALFGLLGAML
201: SELFTNWTIY ANKAAALVTL LVVIAINLAI GILPHVDNFA HIGGFLTGFL LGFVLLMRPH YGWMQRYALP SDVKYTTKKY LAYQWALLAV ASVLAVIGFA
301: VGLGMLFRGV NANDHCGWCH YLSCVPTSRW SCGK

Best Arabidopsis Sequence Match ( AT1G63120.1 )
(BLAST)

001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC

Arabidopsis Description

RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.