Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- peroxisome 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES11282 | Sorghum | cytosol | 93.82 | 93.82 |
| TraesCS4A01G179600.1 | Wheat | plasma membrane | 45.88 | 81.25 |
| TraesCS2B01G419100.1 | Wheat | plasma membrane | 78.82 | 79.29 |
| TraesCS2D01G398500.1 | Wheat | plasma membrane | 78.53 | 78.76 |
| TraesCS2A01G401000.1 | Wheat | plasma membrane | 78.82 | 78.59 |
| Os04t0569300-01 | Rice | cytosol | 77.35 | 76.9 |
| VIT_02s0025g04130.t01 | Wine grape | cytosol, plasma membrane, vacuole | 61.47 | 63.72 |
| Solyc03g026080.2.1 | Tomato | plasma membrane | 57.65 | 61.64 |
| PGSC0003DMT400037141 | Potato | cytosol, golgi, plasma membrane | 57.35 | 61.32 |
| Zm00001d021231_P002 | Maize | plasma membrane | 58.24 | 61.11 |
| PGSC0003DMT400007890 | Potato | plasma membrane | 59.12 | 60.91 |
| VIT_16s0100g00640.t01 | Wine grape | plasma membrane | 57.65 | 60.31 |
| AT1G63120.1 | Thale cress | cytosol, golgi, plasma membrane | 56.18 | 60.25 |
| Zm00001d052734_P002 | Maize | plasma membrane | 57.06 | 60.25 |
| Zm00001d006179_P002 | Maize | plasma membrane | 57.94 | 60.24 |
| KRH09112 | Soybean | plasma membrane | 57.94 | 59.88 |
| Solyc08g080500.2.1 | Tomato | cytosol, golgi, plasma membrane | 58.53 | 59.76 |
| CDY45976 | Canola | plasma membrane | 55.59 | 59.25 |
| Bra026997.1-P | Field mustard | cytosol, golgi, plasma membrane | 55.59 | 59.25 |
| KRH38564 | Soybean | plasma membrane | 57.35 | 59.09 |
| CDY47350 | Canola | plasma membrane | 54.71 | 59.05 |
| Bra027622.1-P | Field mustard | plasma membrane | 54.41 | 58.92 |
| Zm00001d029667_P001 | Maize | plasma membrane | 57.65 | 58.68 |
| Zm00001d029668_P001 | Maize | plasma membrane | 57.65 | 58.68 |
| KRG91456 | Soybean | cytosol, golgi, plasma membrane | 56.76 | 58.66 |
| CDY67235 | Canola | plasma membrane | 55.0 | 58.62 |
| HORVU2Hr1G095170.6 | Barley | mitochondrion | 63.53 | 58.54 |
| KRH35359 | Soybean | cytosol, golgi, plasma membrane | 56.18 | 57.88 |
| CDY49197 | Canola | plasma membrane | 54.41 | 57.63 |
| Bra005930.1-P | Field mustard | plasma membrane | 53.53 | 56.0 |
| AT1G12750.4 | Thale cress | plasma membrane | 50.29 | 55.7 |
| CDX78286 | Canola | plasma membrane | 53.24 | 55.69 |
| CDX81043 | Canola | plasma membrane | 52.94 | 55.21 |
| AT5G07250.1 | Thale cress | plasma membrane | 56.18 | 55.2 |
| Zm00001d027355_P001 | Maize | plasma membrane | 51.18 | 54.04 |
| Bra009279.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 55.0 | 53.89 |
| CDX98992 | Canola | plasma membrane | 53.82 | 53.82 |
| CDX70021 | Canola | plasma membrane | 54.71 | 53.6 |
| Bra019783.1-P | Field mustard | plasma membrane | 47.65 | 53.29 |
| CDY66606 | Canola | plasma membrane | 47.65 | 53.29 |
| CDX70020 | Canola | mitochondrion, plasma membrane | 50.29 | 52.78 |
| AT4G23070.1 | Thale cress | plasma membrane | 48.53 | 52.72 |
| CDY53134 | Canola | plasma membrane | 48.24 | 52.23 |
| Bra013673.1-P | Field mustard | plasma membrane | 42.94 | 51.77 |
| CDY41251 | Canola | plasma membrane | 47.65 | 51.76 |
| CDX98993 | Canola | cytosol | 46.18 | 49.37 |
| CDY60266 | Canola | plasma membrane | 49.71 | 47.21 |
| Bra009280.1-P | Field mustard | cytosol | 50.59 | 46.11 |
| Zm00001d048606_P001 | Maize | cytosol, nucleus, plasma membrane | 49.41 | 41.9 |
| Zm00001d039870_P002 | Maize | plasma membrane | 49.41 | 33.47 |
Protein Annotations
| Gene3D:1.20.1540.10 | EntrezGene:100272312 | MapMan:19.4.2.6 | UniProt:B4FMX3 | EMBL:BT038461 | EMBL:EU954921 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 | GO:GO:0006508 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008233 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 |
| InterPro:IPR035952 | ProteinID:ONM14837.1 | PFAM:PF01694 | PANTHER:PTHR22936 | PANTHER:PTHR22936:SF31 | InterPro:Peptidase_S54_rhomboid |
| InterPro:Peptidase_S54_rhomboid_dom | InterPro:Rhomboid-like_sf | MEROPS:S54.015 | SUPFAM:SSF144091 | TMHMM:TMhelix | UniParc:UPI00017B6CE2 |
| EnsemblPlantsGene:Zm00001d002632 | EnsemblPlants:Zm00001d002632_P001 | EnsemblPlants:Zm00001d002632_T001 | SEG:seg | : | : |
Description
RHOMBOID-like protein 3
Coordinates
chr2:-:17558498..17560398
Molecular Weight (calculated)
37160.5 Da
IEP (calculated)
9.329
GRAVY (calculated)
0.407
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNAADVEAG AQARAAPATT GIKPPPGRYN NMTSNGPYTP PSPFYYDPAA AHGRHHWSWL VPLVVIANVL MFVLVMFYNN CPRSGGDCVG RGFLRRFSFQ
101: PLKENPLLGP TAATLQRYGA LDWYKVVHGN QAWRLESCTW LHAGLIHLLA NMISLIFIGV RLEQQFGFWK VGLVYLVSGF GGSVLSVFFI RKGVSVGASG
201: ALFGLLGAML SELITNWSIY TNRFAAMLNL IIIAAINLAL GILPHVDNFA HIGGFATGFL LGFVLLIQPQ FGWLEQPFGA KTKSKYKAYQ IILLLAALVL
301: LAAGFAVGLV MVFRGENGND HCSWCHYLTC VPTSSWKCDN
101: PLKENPLLGP TAATLQRYGA LDWYKVVHGN QAWRLESCTW LHAGLIHLLA NMISLIFIGV RLEQQFGFWK VGLVYLVSGF GGSVLSVFFI RKGVSVGASG
201: ALFGLLGAML SELITNWSIY TNRFAAMLNL IIIAAINLAL GILPHVDNFA HIGGFATGFL LGFVLLIQPQ FGWLEQPFGA KTKSKYKAYQ IILLLAALVL
301: LAAGFAVGLV MVFRGENGND HCSWCHYLTC VPTSSWKCDN
001: MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP AIVVANIALF AISMFINNCP KNSAYCLARF LGRFAFQPMK
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR
Arabidopsis Description
RBL1RHOMBOID-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQX7]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.