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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • plasma membrane 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:plasma membrane, plastid
BaCelLo:plastid
MultiLoc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY66606 Canola plasma membrane 81.56 96.05
AT1G12750.4 Thale cress plasma membrane 65.08 75.9
CDY45976 Canola plasma membrane 57.82 64.89
CDY47350 Canola plasma membrane 56.98 64.76
CDY67235 Canola plasma membrane 57.54 64.58
CDY49197 Canola plasma membrane 56.98 63.55
VIT_02s0025g04130.t01 Wine grape cytosol, plasma membrane, vacuole 53.07 57.93
TraesCS4A01G179600.1 Wheat plasma membrane 31.01 57.81
Os09t0525900-01 Rice plasma membrane 51.96 57.59
TraesCS5D01G320400.1 Wheat plasma membrane 51.4 57.5
HORVU5Hr1G080690.2 Barley plasma membrane 51.4 57.32
EER99221 Sorghum cytosol, peroxisome, plasma membrane 51.96 57.23
TraesCS5A01G314000.1 Wheat plasma membrane 51.4 57.14
TraesCS5B01G314900.1 Wheat plasma membrane 51.4 56.97
Zm00001d021231_P002 Maize plasma membrane 51.4 56.79
Zm00001d006179_P002 Maize plasma membrane 51.68 56.57
Os08t0546700-01 Rice plasma membrane 50.84 56.35
TraesCS1D01G187500.1 Wheat plasma membrane 50.28 55.73
Os10t0521900-01 Rice plasma membrane 51.68 55.72
TraesCS1B01G196600.1 Wheat plasma membrane 50.56 55.52
TraesCS7A01G269900.1 Wheat plasma membrane 50.0 55.42
Zm00001d029668_P001 Maize plasma membrane 51.68 55.39
Zm00001d029667_P001 Maize plasma membrane 51.68 55.39
TraesCS1A01G188900.1 Wheat plasma membrane 50.56 55.35
CDX98992 Canola plasma membrane 52.51 55.29
PGSC0003DMT400007890 Potato plasma membrane 50.84 55.15
HORVU1Hr1G048610.3 Barley plasma membrane 50.0 55.08
Zm00001d052734_P002 Maize plasma membrane 49.44 54.97
HORVU7Hr1G056630.1 Barley plasma membrane 50.0 54.91
Os03t0116400-01 Rice cytosol, peroxisome, plasma membrane 49.72 54.77
Solyc08g080500.2.1 Tomato cytosol, golgi, plasma membrane 50.84 54.65
CDY41251 Canola plasma membrane 47.77 54.63
TraesCS7B01G168100.1 Wheat plasma membrane 50.0 54.57
TraesCS7D01G270400.1 Wheat plasma membrane 49.72 54.27
CDX70021 Canola plasma membrane 52.51 54.18
CDY53134 Canola plasma membrane 47.21 53.82
EER94630 Sorghum cytosol, golgi, plasma membrane 50.0 53.43
TraesCS2B01G419100.1 Wheat plasma membrane 49.72 52.66
TraesCS2D01G398500.1 Wheat plasma membrane 49.72 52.51
CDX70020 Canola mitochondrion, plasma membrane 47.49 52.47
TraesCS2A01G401000.1 Wheat plasma membrane 49.72 52.2
TraesCS5A01G526000.1 Wheat plasma membrane 48.04 51.81
EES11282 Sorghum cytosol 48.88 51.47
TraesCS4D01G350300.1 Wheat plasma membrane 47.77 51.35
TraesCS4B01G356600.1 Wheat plasma membrane 47.77 51.2
Zm00001d027355_P001 Maize plasma membrane 45.53 50.62
CDX78286 Canola plasma membrane 45.53 50.15
CDX81043 Canola plasma membrane 45.53 50.0
EER95642 Sorghum cytosol, golgi, plasma membrane 45.53 50.0
Os04t0569300-01 Rice cytosol 47.77 50.0
Zm00001d002632_P001 Maize plasma membrane 47.21 49.71
CDY47879 Canola plasma membrane 50.56 47.51
CDY39528 Canola plasma membrane 50.56 47.26
CDX98993 Canola cytosol 41.9 47.17
CDX87921 Canola plasma membrane 26.26 44.76
HORVU4Hr1G086150.3 Barley plastid 48.04 44.33
CDY60552 Canola plasma membrane 38.55 44.23
CDY40148 Canola plasma membrane 38.55 43.81
CDY65908 Canola plasma membrane 38.27 43.49
HORVU2Hr1G095170.6 Barley mitochondrion 44.13 42.82
CDY65838 Canola plasma membrane 45.81 41.94
CDX78204 Canola plasma membrane 45.81 41.94
CDY30844 Canola cytosol, peroxisome, plasma membrane 45.53 41.69
CDX76189 Canola cytosol, peroxisome, plasma membrane 45.53 41.69
CDX73525 Canola plasma membrane 45.53 40.55
HORVU0Hr1G006330.1 Barley plastid 15.36 36.18
HORVU3Hr1G029090.1 Barley plastid 15.36 36.18
CDX87497 Canola plasma membrane 34.08 31.61
CDX88394 Canola plasma membrane 32.68 30.15
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6GO:A0A078J999UniProt:A0A078J999EnsemblPlants:CDY60266ProteinID:CDY60266
ProteinID:CDY60266.1GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575GO:GO:0006508
GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0016020GO:GO:0016021GO:GO:0016787
GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00028398001InterPro:IPR035952PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF63
InterPro:Peptidase_S54_rhomboidInterPro:Peptidase_S54_rhomboid_domInterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixUniParc:UPI0004EEC931
SEG:seg:::::
Description
BnaC05g49300DRhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078J999]
Coordinates
chrLK033861:+:27913..29639
Molecular Weight (calculated)
39759.1 Da
IEP (calculated)
9.303
GRAVY (calculated)
0.384
Length
358 amino acids
Sequence
(BLAST)
001: MRVYFSRVIN DTSPSEILIR KVNILKEKLP CHHHHHHQNS LNVISLRDNK TLEETMPSRK NIGNTQWTAW LTPVIVLACI AVFIVAMFIN DCPKTVAGAN
101: GDCVPRFLRR FSFQPLRENP LLGPSSSTLE KMGALDRSKV VNGNEKWRLV TSMWLHAGVI HLIVNMFNVV LIGFRLEQQF GFIRVGLIYL IAGLGGSILS
201: ALFLQNNISV GASGALLGLL GAMLSELLTN WTIYANKLAA LFTVLFIVAI DLAIGLLPWV DNFAHIGGFL TGFLLGFVLL VRPQYGWEES GNSPSQYGAP
301: RARSKYNPCQ YLLFFIAAVL VVAGLAVGIV MLLKGENGNK LCKWCHHLDC IETSRWTC
Best Arabidopsis Sequence Match ( AT1G12750.1 )
(BLAST)
001: MRSRDMERGR KHRGDTQWTA WLTPTIVVAN VSIFIVVMYT NDCPKTTTGA NGDCVAKLLR RFSFQPLREN PFLGPSSSTL EKLGALDWKK VVQGNEKWRL
101: ITAMWLHAGI IHLVMNMFDV IIFGIRLEQQ FGFIRIGLIY LISGFGGSIL SALFLQKSIS VGASGALLGL MGAMLSELLT NWTIYKSKLC ALLSFLFIIA
201: INLAIGLLPW VDNFAHIGGL LTGFCLGFIL LMQPQSGWEE FRNSSQYGAR ARSKYNPCQY VLFFVAAVLV VAGLTVGLVM LFDGENGNKH CKWCHRLDCY
301: PTSKWSC
Arabidopsis Description
RBL6RHOMBOID-like protein 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ48]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.