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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • mitochondrion 1
  • peroxisome 1
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:mitochondrion, peroxisome, plasma membrane
iPSORT:mitochondrion
MultiLoc:peroxisome
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G076010.1
HORVU2Hr1G084420.1
HORVU3Hr1G026980.2
HORVU3Hr1G071060.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G63120.1 HORVU2Hr1G084420.1 AT1G27300.1 21798944
AT5G07250.1 HORVU1Hr1G076010.1 AT3G16310.1 21798944
AT5G07250.1 HORVU3Hr1G026980.2 AT3G16310.1 21798944
AT5G07250.1 HORVU3Hr1G071060.1 AT3G16310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7B01G168100.1 Wheat plasma membrane 97.55 96.95
TraesCS7D01G270400.1 Wheat plasma membrane 97.24 96.65
TraesCS7A01G269900.1 Wheat plasma membrane 95.4 96.28
Os08t0546700-01 Rice plasma membrane 84.66 85.45
Zm00001d052734_P002 Maize plasma membrane 80.37 81.37
HORVU5Hr1G080690.2 Barley plasma membrane 78.53 79.75
GSMUA_Achr2P03320_001 Banana cytosol, golgi, plasma membrane 65.95 66.98
GSMUA_Achr1P07920_001 Banana plasma membrane 65.03 66.04
GSMUA_Achr9P20880_001 Banana plasma membrane 63.8 64.6
KRH09112 Soybean plasma membrane 62.58 62.01
VIT_02s0025g04130.t01 Wine grape cytosol, plasma membrane, vacuole 61.96 61.59
KRH38564 Soybean plasma membrane 62.27 61.52
KRG91456 Soybean cytosol, golgi, plasma membrane 61.66 61.09
PGSC0003DMT400037141 Potato cytosol, golgi, plasma membrane 59.51 61.01
AT1G63120.1 Thale cress cytosol, golgi, plasma membrane 59.2 60.88
Solyc03g026080.2.1 Tomato plasma membrane 59.2 60.69
CDY47350 Canola plasma membrane 58.59 60.63
VIT_16s0100g00640.t01 Wine grape plasma membrane 60.12 60.31
KRH35359 Soybean cytosol, golgi, plasma membrane 61.04 60.3
Bra027622.1-P Field mustard plasma membrane 57.98 60.19
Bra026997.1-P Field mustard cytosol, golgi, plasma membrane 58.59 59.87
CDY67235 Canola plasma membrane 58.59 59.87
CDY45976 Canola plasma membrane 58.59 59.87
CDX98992 Canola plasma membrane 61.96 59.41
CDY49197 Canola plasma membrane 58.28 59.19
PGSC0003DMT400007890 Potato plasma membrane 59.82 59.09
Solyc08g080500.2.1 Tomato cytosol, golgi, plasma membrane 59.82 58.56
AT5G07250.1 Thale cress plasma membrane 61.96 58.38
CDX70021 Canola plasma membrane 61.96 58.21
Bra009279.1-P Field mustard cytosol, peroxisome, plasma membrane 61.96 58.21
CDY66606 Canola plasma membrane 53.99 57.89
Bra019783.1-P Field mustard plasma membrane 53.99 57.89
HORVU1Hr1G048610.3 Barley plasma membrane 57.67 57.85
CDX70020 Canola mitochondrion, plasma membrane 57.06 57.41
AT1G12750.4 Thale cress plasma membrane 53.68 57.0
CDX78286 Canola plasma membrane 56.44 56.62
Bra005930.1-P Field mustard plasma membrane 56.13 56.31
CDX81043 Canola plasma membrane 55.52 55.52
CDY53134 Canola plasma membrane 50.61 52.55
Bra013673.1-P Field mustard plasma membrane 45.09 52.13
CDX98993 Canola cytosol 50.61 51.89
CDY41251 Canola plasma membrane 49.69 51.76
HORVU4Hr1G086150.3 Barley plastid 60.74 51.03
AT4G23070.1 Thale cress plasma membrane 48.77 50.8
CDY60266 Canola plasma membrane 54.91 50.0
Bra009280.1-P Field mustard cytosol 54.91 47.99
HORVU4Hr1G027850.1 Barley peroxisome 55.52 47.76
HORVU2Hr1G095170.6 Barley mitochondrion 47.24 41.73
HORVU0Hr1G006330.1 Barley plastid 17.18 36.84
HORVU3Hr1G029090.1 Barley plastid 17.18 36.84
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6UniProt:A0A287WLE6GO:GO:0003674GO:GO:0003824GO:GO:0004252
GO:GO:0005575GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0016020
GO:GO:0016021GO:GO:0016787GO:GO:0019538EnsemblPlantsGene:HORVU7Hr1G056630EnsemblPlants:HORVU7Hr1G056630.1InterPro:IPR035952
PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF62InterPro:Peptidase_S54_rhomboidInterPro:Peptidase_S54_rhomboid_domInterPro:Rhomboid-like_sf
SUPFAM:SSF144091TMHMM:TMhelixUniParc:UPI000B474E5ESEG:seg::
Description
Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A287WLE6]
Coordinates
chrchr7H:+:238440698..238446807
Molecular Weight (calculated)
35915.9 Da
IEP (calculated)
8.711
GRAVY (calculated)
0.342
Length
326 amino acids
Sequence
(BLAST)
001: MASGSGEGKA GRAGAGYQQY ASYGTGTGYD ERQWWPWLVP TVLGACVSVF AVEMSLNDCP RHGSTLGGDA PCVAGFLRQF SFQPLRENPL LGPSSATLEK
101: MGALDWAKVV HQHQWWRLFS CVWLHAGLIH LIVNMMSLLF IGIRLEQQFG FVRIGIIYLL SGFGGSVLSA LFLRNHYISV GASGALFGLL GSMLSELIMN
201: WTIYSNKAAA ITTLLFIIAI NLAIGILPHA DNFAHIGGFV SGFLFGFVLL ARPQFGWMER HELPQTDQPP KYKMYQYALW GAALLFLLVG YVVGLAMLFK
301: GKNGNDGCHW CRYLNCVPTS RWKCST
Best Arabidopsis Sequence Match ( AT5G07250.1 )
(BLAST)
001: MAVGDDDLEN RMSAKDRGIG SRGGDRNRIG PPPLPVALSS STEFGDNALS SRWTSWLVPM FVVANVAVFV VAMFVNNCPN HFESHRLRGH CVAKFLGRLS
101: FEPLRTNPLF GPSSHTLEKL GALEWSKVVE KKEGWRLLTC IWLHAGVIHL GANMLSLVFI GIRLEQQFGF VRIGVIYLLS GIGGSVLSSL FIRNSISVGA
201: SGALFGLLGS MLSELFTNWT IYSNKIAALL TLLFVILINL AIGILPHVDN FAHVGGFVTG FLLGFILLAR PQFKWLAREH MPQGTPLRYK YKTYQYLLWL
301: LSLVLLIAGF VVALLMLFRG ENGNDHCRWC HYLRCVPTSS WRCDDV
Arabidopsis Description
RBL3Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UBV1]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.