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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 2
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70995
CDX88803
CDX92368
CDX97739
CDY09128
CDY30157
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G07250.1 CDX97739 AT3G16310.1 21798944
AT5G07250.1 CDY30157 AT3G16310.1 21798944
AT5G07250.1 CDX70995 AT5G22290.1 21798944
AT5G07250.1 CDX88803 AT5G22290.1 21798944
AT5G07250.1 CDX92368 AT5G22290.1 21798944
AT5G07250.1 CDY09128 AT5G22290.1 21798944
AT5G07250.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra005930.1-P Field mustard plasma membrane 92.94 93.23
CDX78286 Canola plasma membrane 92.94 93.23
CDX98992 Canola plasma membrane 75.46 72.35
CDX70021 Canola plasma membrane 76.38 71.76
AT5G07250.1 Thale cress plasma membrane 75.15 70.81
CDX70020 Canola mitochondrion, plasma membrane 68.1 68.52
CDX98993 Canola cytosol 61.96 63.52
PGSC0003DMT400037141 Potato cytosol, golgi, plasma membrane 59.82 61.32
KRH09112 Soybean plasma membrane 61.35 60.79
KRG91456 Soybean cytosol, golgi, plasma membrane 61.35 60.79
Solyc03g026080.2.1 Tomato plasma membrane 59.2 60.69
KRH38564 Soybean plasma membrane 61.35 60.61
KRH35359 Soybean cytosol, golgi, plasma membrane 60.43 59.7
TraesCS4A01G179600.1 Wheat plasma membrane 34.66 58.85
Os09t0525900-01 Rice plasma membrane 58.28 58.82
TraesCS5D01G320400.1 Wheat plasma membrane 57.36 58.44
TraesCS5A01G314000.1 Wheat plasma membrane 57.36 58.07
Zm00001d021231_P002 Maize plasma membrane 57.67 58.02
HORVU5Hr1G080690.2 Barley plasma membrane 57.06 57.94
TraesCS5B01G314900.1 Wheat plasma membrane 57.36 57.89
Os03t0116400-01 Rice cytosol, peroxisome, plasma membrane 57.67 57.85
Zm00001d052734_P002 Maize plasma membrane 57.06 57.76
EER99221 Sorghum cytosol, peroxisome, plasma membrane 57.36 57.54
GSMUA_Achr11P... Banana cytosol 59.2 57.44
Os08t0546700-01 Rice plasma membrane 56.75 57.28
VIT_16s0100g00640.t01 Wine grape plasma membrane 57.06 57.23
CDY47350 Canola plasma membrane 55.21 57.14
Zm00001d029668_P001 Maize plasma membrane 58.28 56.89
Zm00001d029667_P001 Maize plasma membrane 58.28 56.89
Zm00001d006179_P002 Maize plasma membrane 57.06 56.88
TraesCS5A01G526000.1 Wheat plasma membrane 57.67 56.63
CDY67235 Canola plasma membrane 54.91 56.11
CDY45976 Canola plasma membrane 54.91 56.11
TraesCS7A01G269900.1 Wheat plasma membrane 55.52 56.04
TraesCS4D01G350300.1 Wheat plasma membrane 57.06 55.86
EER94630 Sorghum cytosol, golgi, plasma membrane 57.36 55.82
TraesCS7D01G270400.1 Wheat plasma membrane 56.13 55.79
TraesCS7B01G168100.1 Wheat plasma membrane 56.13 55.79
CDY49197 Canola plasma membrane 54.91 55.76
TraesCS1D01G187500.1 Wheat plasma membrane 55.21 55.73
HORVU1Hr1G048610.3 Barley plasma membrane 55.52 55.69
EER95642 Sorghum cytosol, golgi, plasma membrane 55.52 55.52
HORVU7Hr1G056630.1 Barley plasma membrane 55.52 55.52
TraesCS1B01G196600.1 Wheat plasma membrane 55.21 55.21
Os10t0521900-01 Rice plasma membrane 56.13 55.12
TraesCS4B01G356600.1 Wheat plasma membrane 56.44 55.09
TraesCS1A01G188900.1 Wheat plasma membrane 54.29 54.13
Zm00001d027355_P001 Maize plasma membrane 53.37 54.04
EES11282 Sorghum cytosol 55.52 53.24
Zm00001d002632_P001 Maize plasma membrane 55.21 52.94
CDY66606 Canola plasma membrane 48.77 52.3
Os04t0569300-01 Rice cytosol 53.99 51.46
TraesCS2B01G419100.1 Wheat plasma membrane 52.76 50.89
TraesCS2D01G398500.1 Wheat plasma membrane 52.45 50.44
CDY41251 Canola plasma membrane 48.16 50.16
TraesCS2A01G401000.1 Wheat plasma membrane 52.45 50.15
CDX87921 Canola plasma membrane 32.21 50.0
CDY53134 Canola plasma membrane 47.55 49.36
CDY60552 Canola plasma membrane 46.93 49.04
HORVU4Hr1G086150.3 Barley plastid 57.06 47.94
CDY47879 Canola plasma membrane 55.83 47.77
CDY39528 Canola plasma membrane 55.83 47.52
CDY40148 Canola plasma membrane 45.71 47.3
CDY65908 Canola plasma membrane 45.4 46.98
CDY60266 Canola plasma membrane 50.0 45.53
CDX78204 Canola plasma membrane 51.53 42.97
CDY65838 Canola plasma membrane 51.53 42.97
CDX73525 Canola plasma membrane 51.53 41.79
CDY30844 Canola cytosol, peroxisome, plasma membrane 50.0 41.69
CDX76189 Canola cytosol, peroxisome, plasma membrane 49.69 41.43
HORVU3Hr1G029090.1 Barley plastid 18.71 40.13
HORVU0Hr1G006330.1 Barley plastid 18.71 40.13
HORVU2Hr1G095170.6 Barley mitochondrion 43.87 38.75
CDX87497 Canola plasma membrane 37.42 31.61
CDX88394 Canola plasma membrane 36.81 30.93
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6GO:A0A078D163EnsemblPlants:CDX81043ProteinID:CDX81043ProteinID:CDX81043.1
GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575GO:GO:0006508GO:GO:0008150
GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00134479001
InterPro:IPR035952PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF62InterPro:Peptidase_S54_rhomboidInterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixUniParc:UPI0004EE848ASEG:seg:
Description
BnaC03g02970D
Coordinates
chrLK031823:-:1437815..1439094
Molecular Weight (calculated)
36221.7 Da
IEP (calculated)
9.342
GRAVY (calculated)
0.387
Length
326 amino acids
Sequence
(BLAST)
001: MAVGDNPENG ENGSDDGDRS RIGPSPIPSP LSSWLVPLFV VTNVTLFSIA MFVNNCPKHS ESHHSPNHHC VARFLGRLSF EPLRNNPLFG PSSRTLVKLG
101: SLEWCRVVKE REAWRLFTCI WLHAGVIHLV ANMISLLFVG IRLEQQFGFV RIGVIYVTSG VGGSVLSSLF IRNGVSVGAS GALFGLLGSM LSEILTNWTI
201: YSNKVVALLT LLFVIVINLA LGILPHVDNM GHLGGFVVGF LLGFVLLARP QFKWLAREHI PEGRHLTSKY KPYQYILRLI SLALLISGFV VALVMLFRGE
301: EGNVHCRWCR YLRCIPTSKW SCEDVR
Best Arabidopsis Sequence Match ( AT5G07250.1 )
(BLAST)
001: MAVGDDDLEN RMSAKDRGIG SRGGDRNRIG PPPLPVALSS STEFGDNALS SRWTSWLVPM FVVANVAVFV VAMFVNNCPN HFESHRLRGH CVAKFLGRLS
101: FEPLRTNPLF GPSSHTLEKL GALEWSKVVE KKEGWRLLTC IWLHAGVIHL GANMLSLVFI GIRLEQQFGF VRIGVIYLLS GIGGSVLSSL FIRNSISVGA
201: SGALFGLLGS MLSELFTNWT IYSNKIAALL TLLFVILINL AIGILPHVDN FAHVGGFVTG FLLGFILLAR PQFKWLAREH MPQGTPLRYK YKTYQYLLWL
301: LSLVLLIAGF VVALLMLFRG ENGNDHCRWC HYLRCVPTSS WRCDDV
Arabidopsis Description
RBL3Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UBV1]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.