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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:
  • plastid 1
  • plasma membrane 2
  • mitochondrion 3
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plasma membrane
Any Predictor:mitochondrion, plasma membrane, plastid
BaCelLo:plastid
MultiLoc:plasma membrane
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70995
CDX88803
CDX92368
CDX97739
CDY09128
CDY30157
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G07250.1 CDX97739 AT3G16310.1 21798944
AT5G07250.1 CDY30157 AT3G16310.1 21798944
AT5G07250.1 CDX70995 AT5G22290.1 21798944
AT5G07250.1 CDX88803 AT5G22290.1 21798944
AT5G07250.1 CDX92368 AT5G22290.1 21798944
AT5G07250.1 CDY09128 AT5G22290.1 21798944
AT5G07250.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX98993 Canola cytosol 81.79 83.33
Bra009280.1-P Field mustard cytosol 91.36 79.36
CDX98992 Canola plasma membrane 78.7 75.0
CDX70021 Canola plasma membrane 79.63 74.35
AT5G07250.1 Thale cress plasma membrane 73.77 69.08
CDX78286 Canola plasma membrane 69.14 68.92
CDX81043 Canola plasma membrane 68.52 68.1
Solyc03g026080.2.1 Tomato plasma membrane 61.73 62.89
PGSC0003DMT400037141 Potato cytosol, golgi, plasma membrane 61.42 62.58
KRH09112 Soybean plasma membrane 62.96 62.01
KRH38564 Soybean plasma membrane 62.96 61.82
VIT_16s0100g00640.t01 Wine grape plasma membrane 61.73 61.54
KRG91456 Soybean cytosol, golgi, plasma membrane 62.04 61.09
KRH35359 Soybean cytosol, golgi, plasma membrane 61.11 60.0
TraesCS5D01G320400.1 Wheat plasma membrane 59.26 60.0
TraesCS5A01G314000.1 Wheat plasma membrane 59.26 59.63
GSMUA_Achr11P... Banana cytosol 61.73 59.52
HORVU5Hr1G080690.2 Barley plasma membrane 58.95 59.5
Os08t0546700-01 Rice plasma membrane 59.26 59.44
TraesCS5B01G314900.1 Wheat plasma membrane 59.26 59.44
Os09t0525900-01 Rice plasma membrane 58.64 58.82
Zm00001d052734_P002 Maize plasma membrane 58.02 58.39
CDY47350 Canola plasma membrane 56.48 58.1
Zm00001d021231_P002 Maize plasma membrane 58.02 58.02
EER99221 Sorghum cytosol, peroxisome, plasma membrane 58.02 57.85
Os03t0116400-01 Rice cytosol, peroxisome, plasma membrane 57.72 57.54
Zm00001d006179_P002 Maize plasma membrane 58.02 57.49
CDY45976 Canola plasma membrane 56.48 57.37
HORVU7Hr1G056630.1 Barley plasma membrane 57.41 57.06
CDY67235 Canola plasma membrane 55.86 56.74
TraesCS7B01G168100.1 Wheat plasma membrane 57.41 56.71
TraesCS7D01G270400.1 Wheat plasma membrane 57.41 56.71
TraesCS7A01G269900.1 Wheat plasma membrane 56.48 56.66
CDY49197 Canola plasma membrane 55.86 56.39
Os10t0521900-01 Rice plasma membrane 57.41 56.02
TraesCS4A01G179600.1 Wheat plasma membrane 32.72 55.21
Zm00001d029668_P001 Maize plasma membrane 56.48 54.79
Zm00001d029667_P001 Maize plasma membrane 56.48 54.79
CDY66606 Canola plasma membrane 51.23 54.61
TraesCS5A01G526000.1 Wheat plasma membrane 55.86 54.52
TraesCS1D01G187500.1 Wheat plasma membrane 54.32 54.49
EER94630 Sorghum cytosol, golgi, plasma membrane 56.17 54.33
TraesCS1B01G196600.1 Wheat plasma membrane 54.63 54.29
EER95642 Sorghum cytosol, golgi, plasma membrane 54.63 54.29
HORVU1Hr1G048610.3 Barley plasma membrane 54.32 54.15
TraesCS4B01G356600.1 Wheat plasma membrane 55.25 53.59
Zm00001d027355_P001 Maize plasma membrane 53.09 53.42
CDY41251 Canola plasma membrane 51.54 53.35
TraesCS1A01G188900.1 Wheat plasma membrane 53.7 53.21
TraesCS4D01G350300.1 Wheat plasma membrane 54.63 53.15
CDY53134 Canola plasma membrane 51.23 52.87
EES11282 Sorghum cytosol 53.4 50.88
Zm00001d002632_P001 Maize plasma membrane 52.78 50.29
Os04t0569300-01 Rice cytosol 52.78 50.0
TraesCS2B01G419100.1 Wheat plasma membrane 51.54 49.41
TraesCS2D01G398500.1 Wheat plasma membrane 51.54 49.26
TraesCS2A01G401000.1 Wheat plasma membrane 51.23 48.68
CDY60266 Canola plasma membrane 52.47 47.49
CDY47879 Canola plasma membrane 54.94 46.72
CDY39528 Canola plasma membrane 54.63 46.21
CDX87921 Canola plasma membrane 29.63 45.71
HORVU4Hr1G086150.3 Barley plastid 54.01 45.1
CDY60552 Canola plasma membrane 42.59 44.23
CDY40148 Canola plasma membrane 42.9 44.13
CDY65908 Canola plasma membrane 42.59 43.81
CDY30844 Canola cytosol, peroxisome, plasma membrane 52.47 43.48
CDX78204 Canola plasma membrane 52.16 43.22
CDX76189 Canola cytosol, peroxisome, plasma membrane 52.16 43.22
CDY65838 Canola plasma membrane 52.16 43.22
CDX73525 Canola plasma membrane 52.16 42.04
HORVU3Hr1G029090.1 Barley plastid 17.9 38.16
HORVU0Hr1G006330.1 Barley plastid 17.9 38.16
HORVU2Hr1G095170.6 Barley mitochondrion 41.67 36.59
CDX87497 Canola plasma membrane 36.73 30.83
CDX88394 Canola plasma membrane 35.8 29.9
Protein Annotations
Gene3D:1.20.1540.10MapMan:19.4.2.6GO:A0A078BZ80EnsemblPlants:CDX70020ProteinID:CDX70020ProteinID:CDX70020.1
GO:GO:0003674GO:GO:0003824GO:GO:0004252GO:GO:0005575GO:GO:0006508GO:GO:0008150
GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00136116001
InterPro:IPR035952PFAM:PF01694PANTHER:PTHR22936PANTHER:PTHR22936:SF65InterPro:Peptidase_S54_rhomboidInterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sfSUPFAM:SSF144091TMHMM:TMhelixUniParc:UPI0004EE3C6BSEG:seg:
Description
BnaA10g23690D
Coordinates
chrLK031790:-:2730617..2732053
Molecular Weight (calculated)
36650.2 Da
IEP (calculated)
8.665
GRAVY (calculated)
0.448
Length
324 amino acids
Sequence
(BLAST)
001: MSNRIYLLIP IRPSPRPVVP PLVYSEFGDD DELSPQWTSW LIPMFVVANV IVFFATMSVN NCPQHSQHCV ARFLGRFSFE HLRDNPLFGP SSQTLEKLGS
101: LDWFRVVEKH QAWRLLTCIW LHAGVIHLAI NMLSIVFIGT RLEQQFGFVR IGVIYVMSGM GGSILSSLFI RNDISVGASG ALFGLLGSML SELLTNWTIY
201: SNKIAAFLTL LFVIVINMGI GSLPYVDNFA HVGGFLTGFF LGFLLMARPQ IKWLERQHIP QGRRLTSKYK PYQYILWLLS LALLIAGFVV ALVLLFKGED
301: GNDHCHWCRY LSCIPTSRWS CDSV
Best Arabidopsis Sequence Match ( AT5G07250.1 )
(BLAST)
001: MAVGDDDLEN RMSAKDRGIG SRGGDRNRIG PPPLPVALSS STEFGDNALS SRWTSWLVPM FVVANVAVFV VAMFVNNCPN HFESHRLRGH CVAKFLGRLS
101: FEPLRTNPLF GPSSHTLEKL GALEWSKVVE KKEGWRLLTC IWLHAGVIHL GANMLSLVFI GIRLEQQFGF VRIGVIYLLS GIGGSVLSSL FIRNSISVGA
201: SGALFGLLGS MLSELFTNWT IYSNKIAALL TLLFVILINL AIGILPHVDN FAHVGGFVTG FLLGFILLAR PQFKWLAREH MPQGTPLRYK YKTYQYLLWL
301: LSLVLLIAGF VVALLMLFRG ENGNDHCRWC HYLRCVPTSS WRCDDV
Arabidopsis Description
RBL3Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UBV1]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.