Factsheet for Zm00001d052734_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

golgi 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, mitochondrion, plasma membrane
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008871_P001
Zm00001d010783_P001
Zm00001d016570_P001
Zm00001d038803_P001
Zm00001d050563_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63120.1	Zm00001d016570_P001	AT1G27300.1	21798944
AT1G63120.1	Zm00001d050563_P001	AT1G27300.1	21798944
AT5G07250.1	Zm00001d008871_P001	AT3G16310.1	21798944
AT5G07250.1	Zm00001d010783_P001	AT3G16310.1	21798944
AT5G07250.1	Zm00001d038803_P001	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0546700-01	Rice	plasma membrane	81.68	81.42
TraesCS7D01G270400.1	Wheat	plasma membrane	81.99	80.49
HORVU7Hr1G056630.1	Barley	plasma membrane	81.37	80.37
TraesCS7A01G269900.1	Wheat	plasma membrane	80.43	80.19
TraesCS7B01G168100.1	Wheat	plasma membrane	81.06	79.57
Zm00001d021231_P002	Maize	plasma membrane	79.81	79.32
Zm00001d006179_P002	Maize	plasma membrane	80.12	78.9
GSMUA_Achr2P03320_001	Banana	cytosol, golgi, plasma membrane	67.7	67.91
GSMUA_Achr1P07920_001	Banana	plasma membrane	67.7	67.91
GSMUA_Achr9P20880_001	Banana	plasma membrane	66.46	66.46
AT1G63120.1	Thale cress	cytosol, golgi, plasma membrane	63.66	64.67
CDY47350	Canola	plasma membrane	62.42	63.81
KRH38564	Soybean	plasma membrane	65.22	63.64
KRH09112	Soybean	plasma membrane	64.91	63.53
Bra027622.1-P	Field mustard	plasma membrane	61.8	63.38
CDY67235	Canola	plasma membrane	62.73	63.32
VIT_02s0025g04130.t01	Wine grape	cytosol, plasma membrane, vacuole	64.29	63.11
Bra026997.1-P	Field mustard	cytosol, golgi, plasma membrane	62.42	63.01
CDY45976	Canola	plasma membrane	62.42	63.01
CDY49197	Canola	plasma membrane	62.42	62.62
PGSC0003DMT400037141	Potato	cytosol, golgi, plasma membrane	61.49	62.26
KRG91456	Soybean	cytosol, golgi, plasma membrane	63.04	61.7
Solyc03g026080.2.1	Tomato	plasma membrane	60.87	61.64
KRH35359	Soybean	cytosol, golgi, plasma membrane	63.04	61.52
Zm00001d029667_P001	Maize	plasma membrane	63.66	61.38
Zm00001d029668_P001	Maize	plasma membrane	63.66	61.38
VIT_16s0100g00640.t01	Wine grape	plasma membrane	61.18	60.62
PGSC0003DMT400007890	Potato	plasma membrane	61.8	60.3
CDX98992	Canola	plasma membrane	63.66	60.29
AT5G07250.1	Thale cress	plasma membrane	64.6	60.12
Solyc08g080500.2.1	Tomato	cytosol, golgi, plasma membrane	62.11	60.06
Zm00001d027355_P001	Maize	plasma membrane	59.94	59.94
Bra009279.1-P	Field mustard	cytosol, peroxisome, plasma membrane	63.66	59.08
CDX70021	Canola	plasma membrane	63.66	59.08
CDX78286	Canola	plasma membrane	59.01	58.46
CDX70020	Canola	mitochondrion, plasma membrane	58.39	58.02
Bra005930.1-P	Field mustard	plasma membrane	58.39	57.85
Bra019783.1-P	Field mustard	plasma membrane	54.35	57.57
CDY66606	Canola	plasma membrane	54.35	57.57
Zm00001d002632_P001	Maize	plasma membrane	60.25	57.06
CDX81043	Canola	plasma membrane	57.76	57.06
AT1G12750.4	Thale cress	plasma membrane	54.04	56.68
Bra013673.1-P	Field mustard	plasma membrane	47.2	53.9
CDY53134	Canola	plasma membrane	51.86	53.18
CDY41251	Canola	plasma membrane	51.55	53.04
CDX98993	Canola	cytosol	51.86	52.52
AT4G23070.1	Thale cress	plasma membrane	49.38	50.8
Bra009280.1-P	Field mustard	cytosol	57.45	49.6
CDY60266	Canola	plasma membrane	54.97	49.44
Zm00001d048606_P001	Maize	cytosol, nucleus, plasma membrane	58.07	46.63
Zm00001d039870_P002	Maize	plasma membrane	57.45	36.85

Protein Annotations

Gene3D:1.20.1540.10	EntrezGene:103654435	MapMan:19.4.2.6	ProteinID:AQK57906.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004252	GO:GO:0005575	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	InterPro:IPR035952	UniProt:K7U7I3
PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF62	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf
SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI0002210734	EnsemblPlantsGene:Zm00001d052734	EnsemblPlants:Zm00001d052734_P002	EnsemblPlants:Zm00001d052734_T002
SEG:seg	:	:	:	:	:

Description

RHOMBOID-like protein 3

Coordinates

chr4:+:199304832..199310418

Molecular Weight (calculated)

35246.3 Da

IEP (calculated)

8.556

GRAVY (calculated)

0.531

Length

322 amino acids

Sequence
(BLAST)

001: MATGGQGKAA GYYQYPTSYA GAADEERRWW PWLVPTVLVA CIAVFAAEMF VNDCPRHGST LGGGAGCVAA GLLRRFSFQP LRENPLFGPS SATLEKMGAL
101: NWAKVVHEHQ GWRLISCIWL HAGLVHLVVN MLSLLFIGIR LEQQFGFVRI GVIYLISGFG GSVLSALFLH SNYVSVGASG ALFGLLGSML SELIINWTIY
201: SNKAAAIITL LFIIVINLAI GILPHADNFA HIGGFASGFL IGFVLLARPQ FGWMERSELP QTSQPPKYKS YQYVLWVAAL LLLVVGFAII LVMLFTGKNG
301: NDSCHWCHYL NCVPTSRWKC DT

Best Arabidopsis Sequence Match ( AT1G12750.1 )
(BLAST)

001: MRSRDMERGR KHRGDTQWTA WLTPTIVVAN VSIFIVVMYT NDCPKTTTGA NGDCVAKLLR RFSFQPLREN PFLGPSSSTL EKLGALDWKK VVQGNEKWRL
101: ITAMWLHAGI IHLVMNMFDV IIFGIRLEQQ FGFIRIGLIY LISGFGGSIL SALFLQKSIS VGASGALLGL MGAMLSELLT NWTIYKSKLC ALLSFLFIIA
201: INLAIGLLPW VDNFAHIGGL LTGFCLGFIL LMQPQSGWEE FRNSSQYGAR ARSKYNPCQY VLFFVAAVLV VAGLTVGLVM LFDGENGNKH CKWCHRLDCY
301: PTSKWSC

Arabidopsis Description

RBL6RHOMBOID-like protein 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ48]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.