Factsheet for GSMUA_Achr1P07920_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P03320_001	Banana	cytosol, golgi, plasma membrane	85.36	85.36
GSMUA_Achr9P20880_001	Banana	plasma membrane	80.69	80.43
GSMUA_Achr5P20070_001	Banana	plasma membrane	44.86	70.24
GSMUA_Achr11P...	Banana	cytosol	72.59	69.35
GSMUA_Achr5P20060_001	Banana	cytosol	11.84	69.09
TraesCS5D01G320400.1	Wheat	plasma membrane	68.85	69.06
TraesCS5B01G314900.1	Wheat	plasma membrane	69.16	68.73
Os09t0525900-01	Rice	plasma membrane	69.16	68.73
TraesCS5A01G314000.1	Wheat	plasma membrane	68.85	68.63
HORVU5Hr1G080690.2	Barley	plasma membrane	68.54	68.54
Zm00001d021231_P002	Maize	plasma membrane	68.85	68.21
Zm00001d052734_P002	Maize	plasma membrane	67.91	67.7
EER99221	Sorghum	cytosol, peroxisome, plasma membrane	68.54	67.69
Zm00001d006179_P002	Maize	plasma membrane	68.85	67.58
TraesCS7A01G269900.1	Wheat	plasma membrane	66.98	66.56
Os08t0546700-01	Rice	plasma membrane	66.98	66.56
TraesCS7D01G270400.1	Wheat	plasma membrane	67.6	66.16
TraesCS7B01G168100.1	Wheat	plasma membrane	67.29	65.85
HORVU7Hr1G056630.1	Barley	plasma membrane	66.04	65.03
GSMUA_Achr6P34110_001	Banana	plasma membrane	60.75	50.0
GSMUA_Achr10P...	Banana	plasma membrane	35.83	47.13
GSMUA_Achr2P08240_001	Banana	plasma membrane	46.73	40.98
GSMUA_Achr10P...	Banana	cytosol	11.84	38.0
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	57.32	36.65

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr1G07920_001	EnsemblPlants:GSMUA_Achr1P07920_001	EnsemblPlants:GSMUA_Achr1T07920_001	InterPro:IPR035952
UniProt:M0RY00	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF62	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sf	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI000296EA25	SEG:seg	:

Description

OsRhmbd16 - Putative Rhomboid homologue, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G07920_001]

Coordinates

chr1:+:6091529..6094198

Molecular Weight (calculated)

34903.0 Da

IEP (calculated)

8.020

GRAVY (calculated)

0.620

Length

321 amino acids

Sequence
(BLAST)

001: MANVEAGTGG AGKRSGGGAY YYEEAEAEER AWTAWLVPLI VVACVAVFVA EMYVNNCPAH PGPFGSCAAR FLHRVSFQPV RENPLLGPSS STLEKLGALE
101: WNKVVHQGQG WRLVTCIWLH AGIIHLLANM LSLLFVGIRL EQQFGFVRIG ILYLLSGFGG AVLSALLLKK SISVGASGAL FGLLGAMLSE LIINWTIYSN
201: RVAALLTLVV IIAINLGIGL FPHVDNFAHI GGFLSGFLLG FVLLVRPQFG WLERDDLPAS AQVTSKYKAY QYVLWVIALL LLIAGFVVGL VMLFRGLNGN
301: DHCHWCHYLN CVPSSRWSCD A

Best Arabidopsis Sequence Match ( AT5G07250.1 )
(BLAST)

001: MAVGDDDLEN RMSAKDRGIG SRGGDRNRIG PPPLPVALSS STEFGDNALS SRWTSWLVPM FVVANVAVFV VAMFVNNCPN HFESHRLRGH CVAKFLGRLS
101: FEPLRTNPLF GPSSHTLEKL GALEWSKVVE KKEGWRLLTC IWLHAGVIHL GANMLSLVFI GIRLEQQFGF VRIGVIYLLS GIGGSVLSSL FIRNSISVGA
201: SGALFGLLGS MLSELFTNWT IYSNKIAALL TLLFVILINL AIGILPHVDN FAHVGGFVTG FLLGFILLAR PQFKWLAREH MPQGTPLRYK YKTYQYLLWL
301: LSLVLLIAGF VVALLMLFRG ENGNDHCRWC HYLRCVPTSS WRCDDV

Arabidopsis Description

RBL3Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UBV1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.