Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- peroxisome 1
- mitochondrion 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER99221 | Sorghum | cytosol, peroxisome, plasma membrane | 95.37 | 95.08 |
| Zm00001d006179_P002 | Maize | plasma membrane | 95.06 | 94.19 |
| Os09t0525900-01 | Rice | plasma membrane | 89.2 | 89.47 |
| HORVU5Hr1G080690.2 | Barley | plasma membrane | 86.42 | 87.23 |
| TraesCS5D01G320400.1 | Wheat | plasma membrane | 85.19 | 86.25 |
| TraesCS5B01G314900.1 | Wheat | plasma membrane | 85.49 | 85.76 |
| TraesCS5A01G314000.1 | Wheat | plasma membrane | 85.19 | 85.71 |
| Zm00001d052734_P002 | Maize | plasma membrane | 79.32 | 79.81 |
| GSMUA_Achr2P03320_001 | Banana | cytosol, golgi, plasma membrane | 69.44 | 70.09 |
| GSMUA_Achr1P07920_001 | Banana | plasma membrane | 68.21 | 68.85 |
| GSMUA_Achr9P20880_001 | Banana | plasma membrane | 66.98 | 67.39 |
| AT1G63120.1 | Thale cress | cytosol, golgi, plasma membrane | 64.2 | 65.62 |
| VIT_02s0025g04130.t01 | Wine grape | cytosol, plasma membrane, vacuole | 65.74 | 64.94 |
| VIT_16s0100g00640.t01 | Wine grape | plasma membrane | 64.51 | 64.31 |
| PGSC0003DMT400037141 | Potato | cytosol, golgi, plasma membrane | 62.96 | 64.15 |
| KRH09112 | Soybean | plasma membrane | 65.12 | 64.13 |
| CDY45976 | Canola | plasma membrane | 62.96 | 63.95 |
| CDY67235 | Canola | plasma membrane | 62.96 | 63.95 |
| Bra026997.1-P | Field mustard | cytosol, golgi, plasma membrane | 62.96 | 63.95 |
| KRG91456 | Soybean | cytosol, golgi, plasma membrane | 64.81 | 63.83 |
| Solyc03g026080.2.1 | Tomato | plasma membrane | 62.35 | 63.52 |
| CDY47350 | Canola | plasma membrane | 61.73 | 63.49 |
| KRH38564 | Soybean | plasma membrane | 64.51 | 63.33 |
| Bra027622.1-P | Field mustard | plasma membrane | 61.11 | 63.06 |
| KRH35359 | Soybean | cytosol, golgi, plasma membrane | 63.89 | 62.73 |
| CDY49197 | Canola | plasma membrane | 61.42 | 61.99 |
| Zm00001d027355_P001 | Maize | plasma membrane | 61.11 | 61.49 |
| CDX98992 | Canola | plasma membrane | 64.51 | 61.47 |
| Zm00001d029668_P001 | Maize | plasma membrane | 63.27 | 61.38 |
| Zm00001d029667_P001 | Maize | plasma membrane | 63.27 | 61.38 |
| AT5G07250.1 | Thale cress | plasma membrane | 64.51 | 60.4 |
| AT1G12750.4 | Thale cress | plasma membrane | 57.1 | 60.26 |
| CDX70021 | Canola | plasma membrane | 64.2 | 59.94 |
| Bra009279.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 64.2 | 59.94 |
| CDY66606 | Canola | plasma membrane | 56.17 | 59.87 |
| Bra019783.1-P | Field mustard | plasma membrane | 56.17 | 59.87 |
| PGSC0003DMT400007890 | Potato | plasma membrane | 60.8 | 59.7 |
| Solyc08g080500.2.1 | Tomato | cytosol, golgi, plasma membrane | 61.11 | 59.46 |
| Zm00001d002632_P001 | Maize | plasma membrane | 61.11 | 58.24 |
| Bra005930.1-P | Field mustard | plasma membrane | 58.33 | 58.15 |
| CDX70020 | Canola | mitochondrion, plasma membrane | 58.02 | 58.02 |
| CDX78286 | Canola | plasma membrane | 58.02 | 57.85 |
| CDX81043 | Canola | plasma membrane | 58.02 | 57.67 |
| CDY53134 | Canola | plasma membrane | 53.4 | 55.1 |
| Bra013673.1-P | Field mustard | plasma membrane | 47.84 | 54.96 |
| CDY41251 | Canola | plasma membrane | 53.09 | 54.95 |
| AT4G23070.1 | Thale cress | plasma membrane | 51.85 | 53.67 |
| CDX98993 | Canola | cytosol | 50.93 | 51.89 |
| CDY60266 | Canola | plasma membrane | 56.79 | 51.4 |
| Bra009280.1-P | Field mustard | cytosol | 55.56 | 48.26 |
| Zm00001d048606_P001 | Maize | cytosol, nucleus, plasma membrane | 55.25 | 44.64 |
| Zm00001d039870_P002 | Maize | plasma membrane | 55.25 | 35.66 |
Protein Annotations
| Gene3D:1.20.1540.10 | EntrezGene:100274505 | MapMan:19.4.2.6 | UniProt:B4G1H4 | EMBL:BT043212 | EMBL:BT069321 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 | GO:GO:0006508 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008233 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 |
| InterPro:IPR035952 | ProteinID:ONM56577.1 | ProteinID:ONM56581.1 | PFAM:PF01694 | PANTHER:PTHR22936 | PANTHER:PTHR22936:SF62 |
| InterPro:Peptidase_S54_rhomboid | InterPro:Peptidase_S54_rhomboid_dom | InterPro:Rhomboid-like_sf | MEROPS:S54.A02 | SUPFAM:SSF144091 | TMHMM:TMhelix |
| UniParc:UPI00017B74B0 | EnsemblPlantsGene:Zm00001d021231 | EnsemblPlants:Zm00001d021231_P002 | EnsemblPlants:Zm00001d021231_T002 | SEG:seg | : |
Description
RHOMBOID-like protein 3
Coordinates
chr7:-:146607575..146610451
Molecular Weight (calculated)
35704.9 Da
IEP (calculated)
8.707
GRAVY (calculated)
0.433
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDGDGKGR VATAPGAGYG YAAYGGYQGA EERKWWPWLV PTVIVACIAV FVVEMYENNC PKHGSQLGDC VAGFLRRFSF QPLRENPLLG PSSSTLEKMG
101: ALDWNKIVHQ NQGWRLISCI WLHAGLIHLV VNMLSLLFIG IRLEQQFGFV RIGAIYLLSG FGGSVLSALF LRNSYISVGA SGALFGLLGS MLSELLMNWT
201: IYSNKAAAII TLLFIIALNL AIGILPHVDN FAHIGGFATG FLLGFVLLAR PQFSWMESHE LPHTNQPPKY KAYQYILWVV ALVLLLVGFV ISLVMLFKGK
301: NGNDGCHWCH YLNCVPTSKW KCNT
101: ALDWNKIVHQ NQGWRLISCI WLHAGLIHLV VNMLSLLFIG IRLEQQFGFV RIGAIYLLSG FGGSVLSALF LRNSYISVGA SGALFGLLGS MLSELLMNWT
201: IYSNKAAAII TLLFIIALNL AIGILPHVDN FAHIGGFATG FLLGFVLLAR PQFSWMESHE LPHTNQPPKY KAYQYILWVV ALVLLLVGFV ISLVMLFKGK
301: NGNDGCHWCH YLNCVPTSKW KCNT
001: MAVGDDDLEN RMSAKDRGIG SRGGDRNRIG PPPLPVALSS STEFGDNALS SRWTSWLVPM FVVANVAVFV VAMFVNNCPN HFESHRLRGH CVAKFLGRLS
101: FEPLRTNPLF GPSSHTLEKL GALEWSKVVE KKEGWRLLTC IWLHAGVIHL GANMLSLVFI GIRLEQQFGF VRIGVIYLLS GIGGSVLSSL FIRNSISVGA
201: SGALFGLLGS MLSELFTNWT IYSNKIAALL TLLFVILINL AIGILPHVDN FAHVGGFVTG FLLGFILLAR PQFKWLAREH MPQGTPLRYK YKTYQYLLWL
301: LSLVLLIAGF VVALLMLFRG ENGNDHCRWC HYLRCVPTSS WRCDDV
101: FEPLRTNPLF GPSSHTLEKL GALEWSKVVE KKEGWRLLTC IWLHAGVIHL GANMLSLVFI GIRLEQQFGF VRIGVIYLLS GIGGSVLSSL FIRNSISVGA
201: SGALFGLLGS MLSELFTNWT IYSNKIAALL TLLFVILINL AIGILPHVDN FAHVGGFVTG FLLGFILLAR PQFKWLAREH MPQGTPLRYK YKTYQYLLWL
301: LSLVLLIAGF VVALLMLFRG ENGNDHCRWC HYLRCVPTSS WRCDDV
Arabidopsis Description
RBL3Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UBV1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.