Factsheet for Zm00001d039870_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plasma membrane, plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00318	Sorghum	golgi, peroxisome, plasma membrane	76.89	91.69
Os01t0147300-01	Rice	plasma membrane	34.66	85.29
TraesCS3D01G070700.1	Wheat	mitochondrion, plasma membrane	49.4	81.31
TraesCS3B01G085300.1	Wheat	plasma membrane	59.16	79.41
TraesCS3A01G071500.1	Wheat	plasma membrane	58.37	78.34
KRH66050	Soybean	plasma membrane	47.21	61.56
KRG99546	Soybean	plasma membrane	46.22	60.42
VIT_08s0007g00470.t01	Wine grape	plasma membrane	46.02	59.54
VIT_06s0004g04890.t01	Wine grape	plasma membrane	45.62	58.57
CDY47879	Canola	plasma membrane	44.42	58.53
AT2G29050.1	Thale cress	golgi, peroxisome, plasma membrane, plastid	45.22	58.35
CDY39528	Canola	plasma membrane	44.42	58.22
KRH23080	Soybean	plasma membrane	45.02	57.65
KRH10251	Soybean	plasma membrane	44.62	57.58
Zm00001d052734_P002	Maize	plasma membrane	36.85	57.45
Zm00001d029668_P001	Maize	plasma membrane	37.05	55.69
Zm00001d029667_P001	Maize	plasma membrane	37.05	55.69
Bra028389.1-P	Field mustard	plasma membrane	44.22	55.64
Zm00001d021231_P002	Maize	plasma membrane	35.66	55.25
PGSC0003DMT400011238	Potato	plasma membrane	42.03	54.52
Zm00001d006179_P002	Maize	plasma membrane	35.46	54.43
Solyc06g005580.2.1	Tomato	plasma membrane	41.83	54.26
AT3G53780.2	Thale cress	plasma membrane	42.43	54.06
Zm00001d027355_P001	Maize	plasma membrane	33.47	52.17
CDX78204	Canola	plasma membrane	40.44	51.92
CDY65838	Canola	plasma membrane	40.44	51.92
KRG99955	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	40.64	51.52
CDX76189	Canola	cytosol, peroxisome, plasma membrane	40.04	51.41
CDY30844	Canola	cytosol, peroxisome, plasma membrane	40.04	51.41
KRH49106	Soybean	plasma membrane	26.89	50.37
CDX73525	Canola	plasma membrane	40.04	50.0
Zm00001d002632_P001	Maize	plasma membrane	33.47	49.41
Zm00001d048606_P001	Maize	cytosol, nucleus, plasma membrane	38.45	48.13
Bra014862.1-P	Field mustard	cytosol	39.64	46.93

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	UniProt:A0A1D6MLH7	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252
GO:GO:0005575	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	InterPro:IPR035952	ProteinID:ONM30064.1	PFAM:PF01694
PANTHER:PTHR22936	PANTHER:PTHR22936:SF46	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf	SUPFAM:SSF144091
TMHMM:TMhelix	UniParc:UPI000844D27C	EnsemblPlantsGene:Zm00001d039870	EnsemblPlants:Zm00001d039870_P002	EnsemblPlants:Zm00001d039870_T002	SEG:seg

Description

RHOMBOID-like protein 1

Coordinates

chr3:-:17281142..17286871

Molecular Weight (calculated)

54216.5 Da

IEP (calculated)

9.710

GRAVY (calculated)

0.198

Length

502 amino acids

Sequence
(BLAST)

001: MISVPAFPKT PVYREALKLG VILLSPSFPS QVATASPPFP PPHHLQHEAA RADVPPDTEN PAPRARIRRA ATQVPAGRAP APPAAGRAMP RRGETAVVPI
101: DVASAGGGRG DERPKRERHR SHGPGRHGPH RSRPPPPPPP AFRPFRRWFP FLVPLFIVAN IVLFVLTMYV NDCPAHARAT GAAIGGSVGE SATAQGCWLA
201: PELGRFAFQS FKENPLIGPS SATLLEMGAL ETSKVTKDHE GWRLITCIWL HAGVVHILAN MLSLLMIGIR LEKEFGFIRI GTLYVISGVG GSLLSSLFMV
301: SNISVGASGA LFGLLGSMLS ELITNWTIYE NKFAALLTLV MIILINLAVG ILPHVDNFAH LGGFMSGFCL GFVLLMRPQF GYINQKNSPL GFPMGVTKRK
401: FKTYQVILLV ISTMILVSGF TIGLVLLFQG FNASEHCSWC HYMSCVPTSK WSCNAPNNYC MSSQLGNQLN LTCESTGKTA SYVLSDPNNS EAIKNLCVGL
501: CS

Best Arabidopsis Sequence Match ( AT2G29050.1 )
(BLAST)

001: MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP AIVVANIALF AISMFINNCP KNSAYCLARF LGRFAFQPMK
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR

Arabidopsis Description

RBL1RHOMBOID-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQX7]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.