Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 5
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH10251 | Soybean | plasma membrane | 71.61 | 71.98 |
| KRH23080 | Soybean | plasma membrane | 72.12 | 71.94 |
| VIT_08s0007g00470.t01 | Wine grape | plasma membrane | 71.1 | 71.65 |
| CDY47879 | Canola | plasma membrane | 68.54 | 70.34 |
| AT2G29050.1 | Thale cress | golgi, peroxisome, plasma membrane, plastid | 69.57 | 69.92 |
| GSMUA_Achr5P20070_001 | Banana | plasma membrane | 36.57 | 69.76 |
| CDY39528 | Canola | plasma membrane | 67.52 | 68.93 |
| Bra028389.1-P | Field mustard | plasma membrane | 68.29 | 66.92 |
| TraesCS4A01G176100.1 | Wheat | plasma membrane | 52.43 | 64.67 |
| VIT_02s0025g04130.t01 | Wine grape | cytosol, plasma membrane, vacuole | 53.2 | 63.41 |
| VIT_16s0100g00640.t01 | Wine grape | plasma membrane | 52.69 | 63.38 |
| GSMUA_Achr5P20060_001 | Banana | cytosol | 8.7 | 61.82 |
| Os01t0147300-01 | Rice | plasma membrane | 31.97 | 61.27 |
| VIT_09s0002g06570.t01 | Wine grape | plasma membrane | 45.01 | 60.9 |
| TraesCS3D01G070700.1 | Wheat | mitochondrion, plasma membrane | 47.06 | 60.33 |
| Os11t0704800-01 | Rice | plasma membrane | 56.52 | 59.09 |
| TraesCS3B01G085300.1 | Wheat | plasma membrane | 56.52 | 59.09 |
| TraesCS3A01G071500.1 | Wheat | plasma membrane | 56.27 | 58.82 |
| HORVU4Hr1G027850.1 | Barley | peroxisome | 56.78 | 58.58 |
| TraesCS4D01G136600.2 | Wheat | plasma membrane | 56.78 | 58.42 |
| TraesCS4B01G141600.1 | Wheat | plasma membrane | 56.78 | 57.66 |
| EES00318 | Sorghum | golgi, peroxisome, plasma membrane | 57.03 | 52.97 |
| Zm00001d048606_P001 | Maize | cytosol, nucleus, plasma membrane | 52.17 | 50.87 |
| OQU84103 | Sorghum | golgi, peroxisome, plasma membrane, plastid | 55.24 | 50.12 |
| Zm00001d039870_P002 | Maize | plasma membrane | 58.57 | 45.62 |
| VIT_18s0001g04400.t01 | Wine grape | plasma membrane | 37.6 | 42.98 |
Protein Annotations
| Gene3D:1.20.1540.10 | EntrezGene:100241704 | wikigene:100241704 | MapMan:19.4.2.6 | EMBL:AM434817 | ProteinID:CAN64890 |
| ProteinID:CAN64890.1 | ProteinID:CCB43563 | ProteinID:CCB43563.1 | UniProt:F6GV04 | EMBL:FN594951 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 | InterPro:IPR035952 | EntrezGene:LOC100241704 | wikigene:LOC100241704 |
| PFAM:PF01694 | PANTHER:PTHR22936 | PANTHER:PTHR22936:SF46 | InterPro:Peptidase_S54_rhomboid | InterPro:Peptidase_S54_rhomboid_dom | InterPro:Rhomboid-like_sf |
| MEROPS:S54.015 | SUPFAM:SSF144091 | TIGR:TC61461 | TIGR:TC63456 | TIGR:TC66480 | TMHMM:TMhelix |
| UniParc:UPI00015C753E | ArrayExpress:VIT_06s0004g04890 | EnsemblPlantsGene:VIT_06s0004g04890 | EnsemblPlants:VIT_06s0004g04890.t01 | unigene:Vvi.14402 | RefSeq:XP_002283488 |
| RefSeq:XP_002283488.1 | SEG:seg | : | : | : | : |
Description
Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:F6GV04]
Coordinates
chr6:-:5864828..5869317
Molecular Weight (calculated)
43236.3 Da
IEP (calculated)
9.039
GRAVY (calculated)
0.388
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSDPPSSNI EIKIHPRRQD NVVHPAVPSP MGIPAASAPP RQQQHLFSEF RPFKRWFPWM VPTFVVANIA MFLITMFINN CPKNSVSCVA DFLGRFSFQP
101: LKENPLLGPS SSTLEKMGAL EVSKVVHRHQ VWRLISCIWL HAGVFHVLAN MLSLVFIGIR LEQEFGFVRI GLLYVVSGFG GSMLSSLFIQ SSISVGASGA
201: LFGLLGGMLS ELITNWTIYA NKFAALLTLI LIIIVNLAVG ILPHVDNFAH IGGFVSGFLL GFVFLIRPQF GWVSQRNASP GHIAPSVKPK HKMYQYVLWV
301: MSLILLTVGF TVGMVMLLRG VSGNDQCSWC HYLSCVPTSK WSCKSQQVYC ESTTIGNQLN LTCLSNGRSN IYLLPDDNTS QVQQLCSQLC N
101: LKENPLLGPS SSTLEKMGAL EVSKVVHRHQ VWRLISCIWL HAGVFHVLAN MLSLVFIGIR LEQEFGFVRI GLLYVVSGFG GSMLSSLFIQ SSISVGASGA
201: LFGLLGGMLS ELITNWTIYA NKFAALLTLI LIIIVNLAVG ILPHVDNFAH IGGFVSGFLL GFVFLIRPQF GWVSQRNASP GHIAPSVKPK HKMYQYVLWV
301: MSLILLTVGF TVGMVMLLRG VSGNDQCSWC HYLSCVPTSK WSCKSQQVYC ESTTIGNQLN LTCLSNGRSN IYLLPDDNTS QVQQLCSQLC N
001: MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP AIVVANIALF AISMFINNCP KNSAYCLARF LGRFAFQPMK
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR
Arabidopsis Description
RBL1RHOMBOID-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQX7]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.