Factsheet for HORVU4Hr1G027850.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	peroxisome, plasma membrane
MultiLoc:	peroxisome
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G176100.1	Wheat	plasma membrane	81.27	97.16
TraesCS4D01G136600.2	Wheat	plasma membrane	96.31	96.05
TraesCS4B01G141600.1	Wheat	plasma membrane	96.83	95.32
Os11t0704800-01	Rice	plasma membrane	83.64	84.76
Zm00001d048606_P001	Maize	cytosol, nucleus, plasma membrane	71.24	67.33
OQU84103	Sorghum	golgi, peroxisome, plasma membrane, plastid	76.52	67.29
HORVU5Hr1G080690.2	Barley	plasma membrane	51.19	60.44
GSMUA_Achr6P34110_001	Banana	plasma membrane	61.74	60.0
KRG99546	Soybean	plasma membrane	57.78	57.03
VIT_08s0007g00470.t01	Wine grape	plasma membrane	58.31	56.96
VIT_06s0004g04890.t01	Wine grape	plasma membrane	58.58	56.78
GSMUA_Achr10P...	Banana	plasma membrane	36.41	56.56
CDY47879	Canola	plasma membrane	56.46	56.17
KRH66050	Soybean	plasma membrane	56.99	56.1
HORVU7Hr1G056630.1	Barley	plasma membrane	47.76	55.52
KRH23080	Soybean	plasma membrane	57.26	55.36
CDY39528	Canola	plasma membrane	55.94	55.35
KRH10251	Soybean	plasma membrane	56.73	55.27
HORVU1Hr1G048610.3	Barley	plasma membrane	46.97	54.77
AT2G29050.1	Thale cress	golgi, peroxisome, plasma membrane, plastid	55.94	54.5
Bra028389.1-P	Field mustard	plasma membrane	56.2	53.38
KRG99955	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	54.35	52.02
CDY65838	Canola	plasma membrane	53.56	51.92
CDX78204	Canola	plasma membrane	53.56	51.92
CDY30844	Canola	cytosol, peroxisome, plasma membrane	53.03	51.41
CDX76189	Canola	cytosol, peroxisome, plasma membrane	53.03	51.41
AT3G53780.2	Thale cress	plasma membrane	53.3	51.27
KRH49106	Soybean	plasma membrane	35.88	50.75
CDX73525	Canola	plasma membrane	53.3	50.25
GSMUA_Achr10P...	Banana	cytosol	13.19	50.0
Bra014862.1-P	Field mustard	cytosol	51.72	46.23
HORVU4Hr1G086150.3	Barley	plastid	47.23	46.13
HORVU3Hr1G029090.1	Barley	plastid	15.57	38.82
HORVU0Hr1G006330.1	Barley	plastid	15.57	38.82
HORVU2Hr1G095170.6	Barley	mitochondrion	37.2	38.21

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	EMBL:AK365396	UniProt:F2DNC8	GO:GO:0003674	GO:GO:0003824
GO:GO:0004252	GO:GO:0005575	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:HORVU4Hr1G027850	EnsemblPlants:HORVU4Hr1G027850.1
InterPro:IPR035952	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF61	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sf	MEROPS:S54.A02	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI0002006A3E	SEG:seg

Description

Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:F2DNC8]

Coordinates

chrchr4H:+:171250763..171255155

Molecular Weight (calculated)

41477.4 Da

IEP (calculated)

9.863

GRAVY (calculated)

0.424

Length

379 amino acids

Sequence
(BLAST)

001: MKPAGAGPDP GTGAVEVRVE RPQRPPVHPN PARLRARPYY RRWTPWLVPA ASIACVAVFL VTMFVNDCPN RSSGNCSAGF LGRFAFQPLK ENPLLGPSST
101: TLLKMGALDV SKVVQGRQGW RLITCIWLHA GVVHLLINVL CLLFIGIRLE QEFGFVRIGL VYLISGFGGS LMSALFIRAS ISVGASGALF GLIGSMLSEL
201: ITNWSLYANK VAALLTLVLV IVVNLALGIL PRVDNFAHIG GLISGFLLGF VVFIRPQFAW INQRRVTPGP QTAPAERKHK TYQYILWIVA AILLIIGFTV
301: AIVMLFRGYN ANDHCSWCHY LSCVPTKKWK CNSSPTTCTA ILQANTLNLT CEGKGIHRSY IVAEATQDKI DQLCNQLCS

Best Arabidopsis Sequence Match ( AT2G29050.1 )
(BLAST)

001: MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP AIVVANIALF AISMFINNCP KNSAYCLARF LGRFAFQPMK
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR

Arabidopsis Description

RBL1RHOMBOID-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQX7]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.