CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane, peroxisome

Predictor Summary:

nucleus 1
plasma membrane 3
plastid 1
golgi 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, peroxisome, plasma membrane
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
iPSORT:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49106	Soybean	plasma membrane	54.04	79.85
KRH66050	Soybean	plasma membrane	65.4	67.27
KRG99546	Soybean	plasma membrane	64.65	66.67
VIT_08s0007g00470.t01	Wine grape	plasma membrane	64.14	65.46
PGSC0003DMT400022764	Potato	plasma membrane	60.86	62.44
Solyc09g010880.2.1	Tomato	extracellular	59.85	61.88
TraesCS4A01G176100.1	Wheat	plasma membrane	48.23	60.25
Os01t0147300-01	Rice	plasma membrane	29.8	57.84
Os11t0704800-01	Rice	plasma membrane	52.53	55.62
KRH10251	Soybean	plasma membrane	54.55	55.53
KRH09112	Soybean	plasma membrane	45.71	55.02
KRH38564	Soybean	plasma membrane	45.71	54.85
KRH23080	Soybean	plasma membrane	54.29	54.85
TraesCS4D01G136600.2	Wheat	plasma membrane	52.53	54.74
TraesCS3D01G070700.1	Wheat	mitochondrion, plasma membrane	41.92	54.43
HORVU4Hr1G027850.1	Barley	peroxisome	52.02	54.35
CDY30844	Canola	cytosol, peroxisome, plasma membrane	53.54	54.22
CDX76189	Canola	cytosol, peroxisome, plasma membrane	53.54	54.22
KRG91456	Soybean	cytosol, golgi, plasma membrane	44.95	54.1
CDY65838	Canola	plasma membrane	53.28	53.96
CDX78204	Canola	plasma membrane	53.28	53.96
TraesCS4B01G141600.1	Wheat	plasma membrane	52.27	53.77
KRH35359	Soybean	cytosol, golgi, plasma membrane	44.19	53.03
TraesCS3B01G085300.1	Wheat	plasma membrane	50.0	52.94
AT3G53780.2	Thale cress	plasma membrane	52.53	52.79
TraesCS3A01G071500.1	Wheat	plasma membrane	49.75	52.67
Zm00001d048606_P001	Maize	cytosol, nucleus, plasma membrane	53.28	52.62
CDX73525	Canola	plasma membrane	52.53	51.74
Bra014862.1-P	Field mustard	cytosol	53.54	50.0
EES00318	Sorghum	golgi, peroxisome, plasma membrane	51.52	48.46
OQU84103	Sorghum	golgi, peroxisome, plasma membrane, plastid	52.27	48.03
KRH09741	Soybean	plasma membrane	38.13	47.78
Zm00001d039870_P002	Maize	plasma membrane	51.52	40.64
KRH53148	Soybean	plasma membrane	37.37	39.68
KRH64762	Soybean	plasma membrane	36.36	39.13

Protein Annotations

Gene3D:1.20.1540.10	EntrezGene:100799152	MapMan:19.4.2.6	EMBL:ACUP02011351	EnsemblPlantsGene:GLYMA_18G181800	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	UniProt:I1N2H7
InterPro:IPR035952	EnsemblPlants:KRG99955	ProteinID:KRG99955	ProteinID:KRG99955.1	PFAM:PF01694	PANTHER:PTHR22936
PANTHER:PTHR22936:SF38	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf	SUPFAM:SSF144091	TMHMM:TMhelix
UniParc:UPI00029492A7	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:43843063..43847050

Molecular Weight (calculated)

44245.6 Da

IEP (calculated)

8.662

GRAVY (calculated)

0.399

Length

396 amino acids

Sequence
(BLAST)

001: MHIAPHSSMA MEGELQPSQV QLRVNSRQWR KVVNVHSMEI DPSFTSKVEH REVKHFKEWF PWLIPFFVIA NVIVFIITMY VNDCSKTLAT CIAPFLGRFS
101: FQPFNENPLL GPSLITLRKM GALDANKVVH RHQGWRLITC MWLHGGVFHL VANMFGLLVV GIQLEKEFGF VLIGLLFVIS GFGGSLLSAL FIGEKVSVGA
201: SGALFGLLGG MLSELLTNWS LYEKKLGALF TFVFVIAINL AVGVLPHVDN FAHIGGFLSG FLLGFVFLIR PQFGWIKQRN APQPYSPTLI KPKFNKYQCI
301: SWILALILLI VGFTTGLIAL LRGIDANDYC SWCHYLSCVP TSRWNCNPPK SSSCVVTEQI GNQLNLICSS NGKSSTYYMQ NPTDPQIYEL CAQLCT

Best Arabidopsis Sequence Match ( AT3G53780.2 )
(BLAST)

001: MGEKDSETAP IWGKTRERER SNNNNIQPMD LESSSSVSGQ QRSLTQSRSS YEERGRGVKE FRSWFPWLIP CFVVANVAVF VITMYVNNCP KKSGDCFADF
101: LGRFSFQNTR ENPLLGPSSL TLQTMGGLDV KKVVKGDEGW RLLSCNWLHG GVVHLLMNML TLLFIGIRME REFGFIRIGL LYLISGFGGS ILSALFLRSN
201: ISVGASGAVF GLLGGMLSEI FINWTIYSNK VVTIVTLVLI VAVNLGLGVL PGVDNFAHIG GFATGFLLGF VLLIRPHYGW INQRNGPGAK PHRFKIYQGI
301: LWTISLLILV AGFIVGLISL FNNVDGNEHC SWCHYLSCVP TSKWSCNREP ASCTTTQLGN QLSMTCLRNG KSASYILANP SDSRINSLCV QLCR

Arabidopsis Description

RBL4RHOMBOID-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:F4JBM4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.