Factsheet for VIT_08s0007g00470.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 5
golgi 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66050	Soybean	plasma membrane	75.0	75.58
KRG99546	Soybean	plasma membrane	74.23	75.0
Solyc09g010880.2.1	Tomato	extracellular	70.36	71.28
VIT_06s0004g04890.t01	Wine grape	plasma membrane	71.65	71.1
PGSC0003DMT400022764	Potato	plasma membrane	70.36	70.73
TraesCS4A01G176100.1	Wheat	plasma membrane	52.58	64.35
KRG99955	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	65.46	64.14
Os01t0147300-01	Rice	plasma membrane	33.25	63.24
KRH49106	Soybean	plasma membrane	43.04	62.31
VIT_02s0025g04130.t01	Wine grape	cytosol, plasma membrane, vacuole	52.06	61.59
Os11t0704800-01	Rice	plasma membrane	56.7	58.82
TraesCS3D01G070700.1	Wheat	mitochondrion, plasma membrane	45.88	58.36
HORVU4Hr1G027850.1	Barley	peroxisome	56.96	58.31
TraesCS4D01G136600.2	Wheat	plasma membrane	56.96	58.16
VIT_16s0100g00640.t01	Wine grape	plasma membrane	47.94	57.23
TraesCS3B01G085300.1	Wheat	plasma membrane	54.9	56.95
TraesCS4B01G141600.1	Wheat	plasma membrane	56.44	56.88
TraesCS3A01G071500.1	Wheat	plasma membrane	54.64	56.68
AT3G53780.2	Thale cress	plasma membrane	57.22	56.35
VIT_09s0002g06570.t01	Wine grape	plasma membrane	41.75	56.06
CDY65838	Canola	plasma membrane	56.19	55.75
CDX78204	Canola	plasma membrane	56.19	55.75
CDY30844	Canola	cytosol, peroxisome, plasma membrane	55.93	55.5
CDX76189	Canola	cytosol, peroxisome, plasma membrane	55.93	55.5
CDX73525	Canola	plasma membrane	55.93	53.98
EES00318	Sorghum	golgi, peroxisome, plasma membrane	56.44	52.02
Zm00001d048606_P001	Maize	cytosol, nucleus, plasma membrane	53.35	51.62
Bra014862.1-P	Field mustard	cytosol	55.41	50.71
OQU84103	Sorghum	golgi, peroxisome, plasma membrane, plastid	54.12	48.72
Zm00001d039870_P002	Maize	plasma membrane	59.54	46.02
VIT_18s0001g04400.t01	Wine grape	plasma membrane	37.89	42.98

Protein Annotations

Gene3D:1.20.1540.10	EntrezGene:100257915	wikigene:100257915	MapMan:19.4.2.6	EMBL:AM439771	ProteinID:CAN71797
ProteinID:CAN71797.1	ProteinID:CCB55586	ProteinID:CCB55586.1	UniProt:F6HLC2	EMBL:FN595991	GO:GO:0003674
GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006139
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009506	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	GO:GO:0090503	InterPro:IPR035952
EntrezGene:LOC100257915	wikigene:LOC100257915	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF38	InterPro:Peptidase_S54_rhomboid
InterPro:Peptidase_S54_rhomboid_dom	InterPro:Rhomboid-like_sf	MEROPS:S54.015	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI00015CA0BC
ArrayExpress:VIT_08s0007g00470	EnsemblPlantsGene:VIT_08s0007g00470	EnsemblPlants:VIT_08s0007g00470.t01	unigene:Vvi.1021	RefSeq:XP_002270642	RefSeq:XP_002270642.1
SEG:seg	:	:	:	:	:

Description

Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:F6HLC2]

Coordinates

chr8:-:14760441..14764211

Molecular Weight (calculated)

42475.4 Da

IEP (calculated)

8.661

GRAVY (calculated)

0.472

Length

388 amino acids

Sequence
(BLAST)

001: MARDPSSSIE IRVLSKRGSN VIHPVEVDTP PLLPSPSPGP VPVVYREIKH FKKWVPWLIP SFVVANIIMF GITMYVNNCP KNSISCIADF LGRFSFQPFK
101: ENPLLGPSSS TLQKMGALDV SRVVDRHQGW RLITCIWLHG GVFHLLANML SLLVIGIRLE QEFGFVKVGL LYVISGFGGS LLSGLFIQEN ISVGASGALF
201: GLLGGMLSEL ITNWSIYANK LAAFLTLVII IAINLAVGIL PHVDNFAHIG GFLSGFLLGF VFLIRPQFGW VSQIYASPEH STSPKPKFKT YQCILWVASV
301: ILLIIGLTLG LVMLLRGVDA NDRCSWCHYL SCVPTSKWSC KTEPAYCLSN QIGNQLNLTC SSNGKSSIYL LADPTSSQIQ GLCSQLCN

Best Arabidopsis Sequence Match ( AT2G29050.1 )
(BLAST)

001: MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP AIVVANIALF AISMFINNCP KNSAYCLARF LGRFAFQPMK
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR

Arabidopsis Description

RBL1RHOMBOID-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQX7]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.