Factsheet for VIT_09s0002g06570.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
plasma membrane 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87921	Canola	plasma membrane	42.56	58.57
KRH09741	Soybean	plasma membrane	64.01	58.54
AT1G52580.1	Thale cress	cytosol, golgi, plasma membrane	61.59	57.61
Bra030374.1-P	Field mustard	plasma membrane	61.59	57.05
CDY60552	Canola	plasma membrane	61.59	57.05
Bra018974.1-P	Field mustard	plasma membrane	60.55	55.56
CDY40148	Canola	plasma membrane	60.55	55.56
CDY65908	Canola	plasma membrane	60.55	55.56
VIT_02s0025g04130.t01	Wine grape	cytosol, plasma membrane, vacuole	58.13	51.22
VIT_16s0100g00640.t01	Wine grape	plasma membrane	57.09	50.77
VIT_06s0004g04890.t01	Wine grape	plasma membrane	60.9	45.01
VIT_08s0007g00470.t01	Wine grape	plasma membrane	56.06	41.75
GSMUA_Achr2P08240_001	Banana	plasma membrane	52.6	41.53
VIT_18s0001g04400.t01	Wine grape	plasma membrane	41.52	35.09

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	ProteinID:CBI36302	ProteinID:CBI36302.3	UniProt:D7U106	EMBL:FN596494
GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538
InterPro:IPR035952	PFAM:PF01694	PANTHER:PTHR22936	PANTHER:PTHR22936:SF64	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom
InterPro:Rhomboid-like_sf	MEROPS:S54.015	MEROPS:S54.A01	SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI00015CD201
ArrayExpress:VIT_09s0002g06570	EnsemblPlantsGene:VIT_09s0002g06570	EnsemblPlants:VIT_09s0002g06570.t01	SEG:seg	:	:

Description

Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:D7U106]

Coordinates

chr9:-:6491598..6496034

Molecular Weight (calculated)

31840.4 Da

IEP (calculated)

9.589

GRAVY (calculated)

0.430

Length

289 amino acids

Sequence
(BLAST)

001: MGKSKTPGDI EAAAHQVAAR PQARPCPPPP KSWFPWLVPV FFMANVATFV YSMYVNNCPE KTGADRCVFN SYLGRFSFQP LSENPLFGPS PTTLEKLGAL
101: EKKLVVQEGE EWRLVSCIWL HAGAIHLIAN MLSLLFIGVK LEQEFGFLRI GLLYVISGFG GSLLSALHLQ KSISVGASGA LFGLLGAMLS ELFMNWTIYA
201: NKCAALMTLM FVVVLNLAVG FLPHVDSSAH IGGFLSGFLL GFILLVRPQY GYVSRKYIPP GYDGKRVKSK HKWYQYLLWV AALVALIFG

Best Arabidopsis Sequence Match ( AT2G29050.1 )
(BLAST)

001: MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP AIVVANIALF AISMFINNCP KNSAYCLARF LGRFAFQPMK
101: ENPLLGPSSL TLEKMGALDV SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS LLSSLFNRAG ISVGASGALF
201: GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS
301: LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR

Arabidopsis Description

RBL1RHOMBOID-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQX7]
SUBAcon: [peroxisome,golgi,plastid,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.