Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- vacuole 2
- extracellular 1
- endoplasmic reticulum 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0010g03800.t01 | |
| VIT_06s0080g00970.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G63120.1 | VIT_01s0010g03800.t01 | AT1G27300.1 | 21798944 |
| AT1G63120.1 | VIT_06s0080g00970.t01 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_16s0100g00640.t01 | Wine grape | plasma membrane | 73.78 | 74.46 |
| PGSC0003DMT400007890 | Potato | plasma membrane | 72.87 | 72.42 |
| Solyc08g080500.2.1 | Tomato | cytosol, golgi, plasma membrane | 73.48 | 72.37 |
| AT1G63120.1 | Thale cress | cytosol, golgi, plasma membrane | 67.68 | 70.03 |
| CDY47350 | Canola | plasma membrane | 67.07 | 69.84 |
| Bra026997.1-P | Field mustard | cytosol, golgi, plasma membrane | 67.68 | 69.59 |
| CDY45976 | Canola | plasma membrane | 67.68 | 69.59 |
| Bra027622.1-P | Field mustard | plasma membrane | 66.46 | 69.43 |
| CDY67235 | Canola | plasma membrane | 67.07 | 68.97 |
| CDY49197 | Canola | plasma membrane | 67.38 | 68.85 |
| Os09t0525900-01 | Rice | plasma membrane | 65.55 | 66.56 |
| TraesCS5D01G320400.1 | Wheat | plasma membrane | 64.94 | 66.56 |
| HORVU5Hr1G080690.2 | Barley | plasma membrane | 64.94 | 66.36 |
| TraesCS5A01G314000.1 | Wheat | plasma membrane | 64.94 | 66.15 |
| TraesCS5B01G314900.1 | Wheat | plasma membrane | 64.94 | 65.94 |
| Zm00001d021231_P002 | Maize | plasma membrane | 64.94 | 65.74 |
| EER99221 | Sorghum | cytosol, peroxisome, plasma membrane | 64.94 | 65.54 |
| Zm00001d006179_P002 | Maize | plasma membrane | 64.63 | 64.83 |
| Zm00001d052734_P002 | Maize | plasma membrane | 63.11 | 64.29 |
| Os10t0521900-01 | Rice | plasma membrane | 64.94 | 64.16 |
| EER94630 | Sorghum | cytosol, golgi, plasma membrane | 65.24 | 63.88 |
| Zm00001d029668_P001 | Maize | plasma membrane | 64.94 | 63.77 |
| Zm00001d029667_P001 | Maize | plasma membrane | 64.94 | 63.77 |
| AT1G12750.4 | Thale cress | plasma membrane | 59.45 | 63.52 |
| Os08t0546700-01 | Rice | plasma membrane | 62.5 | 63.47 |
| Os03t0116400-01 | Rice | cytosol, peroxisome, plasma membrane | 62.5 | 63.08 |
| TraesCS4A01G179600.1 | Wheat | plasma membrane | 36.89 | 63.02 |
| TraesCS1D01G187500.1 | Wheat | plasma membrane | 61.59 | 62.54 |
| TraesCS7D01G270400.1 | Wheat | plasma membrane | 62.5 | 62.5 |
| TraesCS7A01G269900.1 | Wheat | plasma membrane | 61.28 | 62.23 |
| TraesCS7B01G168100.1 | Wheat | plasma membrane | 62.2 | 62.2 |
| TraesCS1A01G188900.1 | Wheat | plasma membrane | 61.89 | 62.08 |
| HORVU7Hr1G056630.1 | Barley | plasma membrane | 61.59 | 61.96 |
| EES11282 | Sorghum | cytosol | 64.02 | 61.76 |
| Zm00001d002632_P001 | Maize | plasma membrane | 63.72 | 61.47 |
| TraesCS1B01G196600.1 | Wheat | plasma membrane | 60.98 | 61.35 |
| HORVU1Hr1G048610.3 | Barley | plasma membrane | 60.67 | 61.23 |
| TraesCS2B01G419100.1 | Wheat | plasma membrane | 62.5 | 60.65 |
| Bra019783.1-P | Field mustard | plasma membrane | 56.1 | 60.53 |
| CDY66606 | Canola | plasma membrane | 56.1 | 60.53 |
| TraesCS2D01G398500.1 | Wheat | plasma membrane | 62.2 | 60.18 |
| TraesCS2A01G401000.1 | Wheat | plasma membrane | 62.5 | 60.12 |
| TraesCS4D01G350300.1 | Wheat | plasma membrane | 60.67 | 59.76 |
| TraesCS5A01G526000.1 | Wheat | plasma membrane | 60.37 | 59.64 |
| TraesCS4B01G356600.1 | Wheat | plasma membrane | 60.67 | 59.58 |
| EER95642 | Sorghum | cytosol, golgi, plasma membrane | 59.15 | 59.51 |
| Bra013673.1-P | Field mustard | plasma membrane | 50.91 | 59.22 |
| CDY41251 | Canola | plasma membrane | 56.4 | 59.11 |
| CDY53134 | Canola | plasma membrane | 56.4 | 58.92 |
| Zm00001d027355_P001 | Maize | plasma membrane | 57.62 | 58.7 |
| Os04t0569300-01 | Rice | cytosol | 60.67 | 58.19 |
| VIT_09s0002g06570.t01 | Wine grape | plasma membrane | 51.22 | 58.13 |
| AT4G23070.1 | Thale cress | plasma membrane | 54.88 | 57.51 |
| VIT_06s0004g04890.t01 | Wine grape | plasma membrane | 63.41 | 53.2 |
| CDY60266 | Canola | plasma membrane | 57.93 | 53.07 |
| VIT_08s0007g00470.t01 | Wine grape | plasma membrane | 61.59 | 52.06 |
| HORVU4Hr1G086150.3 | Barley | plastid | 60.37 | 51.03 |
| HORVU2Hr1G095170.6 | Barley | mitochondrion | 50.3 | 44.72 |
| VIT_18s0001g04400.t01 | Wine grape | plasma membrane | 41.77 | 40.06 |
| HORVU3Hr1G029090.1 | Barley | plastid | 17.68 | 38.16 |
| HORVU0Hr1G006330.1 | Barley | plastid | 17.68 | 38.16 |
Protein Annotations
| Gene3D:1.20.1540.10 | EntrezGene:100241085 | wikigene:100241085 | MapMan:19.4.2.6 | EMBL:AM432654 | ProteinID:CAN75940 |
| ProteinID:CAN75940.1 | ProteinID:CBI34724 | ProteinID:CBI34724.3 | UniProt:D7TW49 | EMBL:FN596251 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004252 | GO:GO:0005575 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 | InterPro:IPR035952 |
| EntrezGene:LOC100241085 | wikigene:LOC100241085 | PFAM:PF01694 | PANTHER:PTHR22936 | PANTHER:PTHR22936:SF65 | InterPro:Peptidase_S54_rhomboid |
| InterPro:Peptidase_S54_rhomboid_dom | InterPro:Rhomboid-like_sf | MEROPS:S54.015 | MEROPS:S54.A02 | SUPFAM:SSF144091 | TIGR:TC53798 |
| TIGR:TC65384 | TMHMM:TMhelix | UniParc:UPI00015CD483 | ArrayExpress:VIT_02s0025g04130 | EnsemblPlantsGene:VIT_02s0025g04130 | EnsemblPlants:VIT_02s0025g04130.t01 |
| unigene:Vvi.15025 | unigene:Vvi.9696 | RefSeq:XP_002283259 | RefSeq:XP_002283259.1 | SEG:seg | : |
Description
Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:D7TW49]
Coordinates
chr2:-:3652019..3655701
Molecular Weight (calculated)
36382.7 Da
IEP (calculated)
9.171
GRAVY (calculated)
0.359
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MANEDLERGG GMKNRGNNGH PPGYYSSTYY AEASETHWTS WLIPMFVVAN VAVFVVVMYV NDCPKKNTGI EGACVAKFLR RLSFQPLREN PLFGPSSSTL
101: EKLGGLEWNK VVYGDQGWRL VTCIWLHAGV IHLLANMLSL VFIGIRLEQQ FGFVRIGIIY LVSGFGGSIL SSLFIQHNIS VGASGALFGL LGAMLSELIT
201: NWSIYTNKAA ALFTLVVIIA INLAVGILPH VDNFAHIGGF LTGFLLGFML LLRPQFGWVK RQHRPADARV KSKHKVYQYA FWLVAMALLI VGFTVGLVML
301: FRGENGNDHC SWCHYLSCVP TSKWKCDN
101: EKLGGLEWNK VVYGDQGWRL VTCIWLHAGV IHLLANMLSL VFIGIRLEQQ FGFVRIGIIY LVSGFGGSIL SSLFIQHNIS VGASGALFGL LGAMLSELIT
201: NWSIYTNKAA ALFTLVVIIA INLAVGILPH VDNFAHIGGF LTGFLLGFML LLRPQFGWVK RQHRPADARV KSKHKVYQYA FWLVAMALLI VGFTVGLVML
301: FRGENGNDHC SWCHYLSCVP TSKWKCDN
001: MANRDVERVG KKNRGANNNY FYEESSGETH WTSWLIPAIV VANLAVFIAV MFVNDCPKKI TGPNKECVAR FLGRFSFQPL KENPLFGPSS STLEKMGALE
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
101: WRKVVHEHQG WRLLSCMWLH AGIIHLLTNM LSLIFIGIRL EQQFGFIRVG LIYLISGLGG SILSSLFLQE SISVGASGAL FGLLGAMLSE LLTNWTIYAN
201: KAAALITLLF IIAINLALGM LPRVDNFAHI GGFLTGFCLG FVLLVRPQYG WEASRTNTSR TKRKYSMYQY VLFVVSVVLL VVGLTVALVM LFKGENGNKH
301: CKWCHYLSCF PTSKWTC
Arabidopsis Description
RBL2RHOMBOID-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN1]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.