Factsheet for Os04t0569300-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0200500-01
Os02t0509600-01
Os05t0520100-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63120.1	Os02t0509600-01	AT1G27300.1	21798944
AT5G07250.1	Os01t0200500-01	AT3G16310.1	21798944
AT5G07250.1	Os05t0520100-00	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11282	Sorghum	cytosol	78.36	78.82
Zm00001d002632_P001	Maize	plasma membrane	76.9	77.35
TraesCS2D01G398500.1	Wheat	plasma membrane	75.15	75.81
TraesCS2B01G419100.1	Wheat	plasma membrane	74.85	75.74
TraesCS2A01G401000.1	Wheat	plasma membrane	75.15	75.37
TraesCS4A01G179600.1	Wheat	plasma membrane	41.23	73.44
VIT_02s0025g04130.t01	Wine grape	cytosol, plasma membrane, vacuole	58.19	60.67
Os09t0525900-01	Rice	plasma membrane	55.56	58.82
PGSC0003DMT400007890	Potato	plasma membrane	56.43	58.48
HORVU2Hr1G095170.6	Barley	mitochondrion	62.87	58.27
Solyc03g026080.2.1	Tomato	plasma membrane	54.09	58.18
PGSC0003DMT400037141	Potato	cytosol, golgi, plasma membrane	54.09	58.18
KRH09112	Soybean	plasma membrane	55.85	58.05
AT1G63120.1	Thale cress	cytosol, golgi, plasma membrane	53.8	58.04
KRH38564	Soybean	plasma membrane	55.85	57.88
Os08t0546700-01	Rice	plasma membrane	54.39	57.59
VIT_16s0100g00640.t01	Wine grape	plasma membrane	54.68	57.54
CDY45976	Canola	plasma membrane	53.51	57.37
Bra026997.1-P	Field mustard	cytosol, golgi, plasma membrane	53.51	57.37
Solyc08g080500.2.1	Tomato	cytosol, golgi, plasma membrane	55.85	57.36
CDY47350	Canola	plasma membrane	52.63	57.14
Os10t0521900-01	Rice	plasma membrane	55.26	56.93
Os03t0116400-01	Rice	cytosol, peroxisome, plasma membrane	54.09	56.92
KRG91456	Soybean	cytosol, golgi, plasma membrane	54.68	56.84
CDY67235	Canola	plasma membrane	52.92	56.74
Bra027622.1-P	Field mustard	plasma membrane	52.05	56.69
CDY49197	Canola	plasma membrane	52.63	56.07
KRH35359	Soybean	cytosol, golgi, plasma membrane	54.09	56.06
AT1G12750.4	Thale cress	plasma membrane	50.0	55.7
CDX98992	Canola	plasma membrane	55.26	55.59
CDX78286	Canola	plasma membrane	52.63	55.38
Bra009279.1-P	Field mustard	cytosol, peroxisome, plasma membrane	56.14	55.33
Bra005930.1-P	Field mustard	plasma membrane	52.34	55.08
CDX70021	Canola	plasma membrane	55.85	55.04
AT5G07250.1	Thale cress	plasma membrane	55.26	54.62
CDX81043	Canola	plasma membrane	51.46	53.99
CDY66606	Canola	plasma membrane	47.95	53.95
Bra019783.1-P	Field mustard	plasma membrane	47.95	53.95
CDX70020	Canola	mitochondrion, plasma membrane	50.0	52.78
AT4G23070.1	Thale cress	plasma membrane	47.95	52.4
CDY53134	Canola	plasma membrane	46.49	50.64
Bra013673.1-P	Field mustard	plasma membrane	41.23	50.0
CDY41251	Canola	plasma membrane	45.61	49.84
CDX98993	Canola	cytosol	46.2	49.69
CDY60266	Canola	plasma membrane	50.0	47.77
Bra009280.1-P	Field mustard	cytosol	50.88	46.65
Os11t0704800-01	Rice	plasma membrane	48.83	44.65
Os01t0147300-01	Rice	plasma membrane	26.61	44.61

Protein Annotations

Gene3D:1.20.1540.10	MapMan:19.4.2.6	EntrezGene:4336706	EMBL:AK099082	ProteinID:BAF15510.1	ProteinID:BAS90558.1
ProteinID:CAE02252.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004252	GO:GO:0005575	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0019538	InterPro:IPR035952	EnsemblPlantsGene:Os04g0569300	EnsemblPlants:Os04t0569300-01	PFAM:PF01694	PANTHER:PTHR22936
PANTHER:PTHR22936:SF31	InterPro:Peptidase_S54_rhomboid	InterPro:Peptidase_S54_rhomboid_dom	UniProt:Q7XRW9	InterPro:Rhomboid-like_sf	MEROPS:S54.015
SUPFAM:SSF144091	TMHMM:TMhelix	UniParc:UPI000021C8EC	RefSeq:XP_015637146.1	SEG:seg	:

Description

Rhomboid 11, RHOMBOID 11Similar to Membrane protein. (Os04t0569300-01);Similar to Membrane protein. (Os04t0569300-02)

Coordinates

chr4:+:28643350..28645093

Molecular Weight (calculated)

36874.9 Da

IEP (calculated)

9.339

GRAVY (calculated)

0.370

Length

342 amino acids

Sequence
(BLAST)

001: MSNADVEAGG PAGREATTGI KPPPGRYNPS GNGPNAVAPA PPPFYYYDQA AAQERHHRTW VVPLVVIANV AMFVVVMYYN NCPANGGRRD CVGRSFLRRL
101: SFQPLRENPV LGPSAATLRK YGALDWYGVV HGNQAWRLET STWLHAGLIH LAANMISLLI IGIRLEQQFG FWKVGLVYLV SGFGGSVLSV LFISRNGITV
201: GASGALFGLL GAMLSELITN WTIYSNRCAA MVNLIIIAAI NLALGILPRV DNFAHIGGFA TGFLLGFVLL IQPQFGWSEQ VSSAKSKYNA FQIILLTLSV
301: ALLIAGFAAG LVSVFKGVDG NAHCSWCHYL TCVPTSSWKC DK

Best Arabidopsis Sequence Match ( AT1G12750.1 )
(BLAST)

001: MRSRDMERGR KHRGDTQWTA WLTPTIVVAN VSIFIVVMYT NDCPKTTTGA NGDCVAKLLR RFSFQPLREN PFLGPSSSTL EKLGALDWKK VVQGNEKWRL
101: ITAMWLHAGI IHLVMNMFDV IIFGIRLEQQ FGFIRIGLIY LISGFGGSIL SALFLQKSIS VGASGALLGL MGAMLSELLT NWTIYKSKLC ALLSFLFIIA
201: INLAIGLLPW VDNFAHIGGL LTGFCLGFIL LMQPQSGWEE FRNSSQYGAR ARSKYNPCQY VLFFVAAVLV VAGLTVGLVM LFDGENGNKH CKWCHRLDCY
301: PTSKWSC

Arabidopsis Description

RBL6RHOMBOID-like protein 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ48]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.