Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES02290 | Sorghum | nucleus, plastid | 82.26 | 83.54 |
| TraesCS3B01G158900.1 | Wheat | nucleus | 80.73 | 82.5 |
| TraesCS3A01G313000.1 | Wheat | nucleus | 80.43 | 82.19 |
| TraesCS3D01G141300.1 | Wheat | nucleus | 79.51 | 81.76 |
| Zm00001d008871_P001 | Maize | mitochondrion | 80.43 | 81.68 |
| HORVU3Hr1G026980.2 | Barley | nucleus, plastid | 77.06 | 81.03 |
| GSMUA_Achr6P14800_001 | Banana | plastid | 37.92 | 54.87 |
| VIT_09s0002g03770.t01 | Wine grape | mitochondrion, plastid | 44.34 | 45.74 |
| KRH23409 | Soybean | mitochondrion | 44.34 | 43.81 |
| KRH09922 | Soybean | endoplasmic reticulum, nucleus | 44.34 | 43.81 |
| PGSC0003DMT400006495 | Potato | mitochondrion, plastid | 44.65 | 43.58 |
| AT3G16310.1 | Thale cress | plastid | 42.2 | 41.95 |
| Bra027174.1-P | Field mustard | plastid | 42.81 | 41.92 |
| CDY30157 | Canola | plastid | 43.43 | 33.49 |
| Os05t0520100-00 | Rice | mitochondrion | 33.64 | 33.23 |
| Solyc03g120880.2.1 | Tomato | nucleus | 44.34 | 28.88 |
| CDX97739 | Canola | plastid | 42.51 | 20.84 |
Protein Annotations
| MapMan:23.5.1.1.6.5 | Gene3D:3.30.70.330 | EntrezGene:4327063 | EMBL:AK068290 | ProteinID:BAD73206.1 | ProteinID:BAF04231.1 |
| ProteinID:BAS70903.1 | ProteinID:EEE54062.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003697 |
| GO:GO:0003824 | GO:GO:0004576 | GO:GO:0005488 | GO:GO:0005543 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005643 | GO:GO:0005975 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0006464 | GO:GO:0006486 | GO:GO:0006607 | GO:GO:0006810 | GO:GO:0006913 |
| GO:GO:0006999 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0031965 | GO:GO:0044613 | GO:GO:0044615 | GO:GO:0051028 | InterPro:IPR007846 | InterPro:IPR012677 |
| InterPro:Nucleoporin_NUP53 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os01g0200500 | EnsemblPlants:Os01t0200500-01 | PFAM:PF05172 | PIRSF:PIRSF038119 |
| PFscan:PS51472 | PANTHER:PTHR21527 | UniProt:Q5QN03 | InterPro:RBD_domain_sf | InterPro:RRM_NUP35_dom | SUPFAM:SSF54928 |
| UniParc:UPI000048DED5 | RefSeq:XP_015621943.1 | SEG:seg | : | : | : |
Description
MPPN family protein. (Os01t0200500-01)
Coordinates
chr1:+:5442866..5446246
Molecular Weight (calculated)
35393.8 Da
IEP (calculated)
10.203
GRAVY (calculated)
-0.618
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MSASRPDHRR HHPPFLRDLS SPISSAVRLP PASLRRETQG STTPPPPPPP LLFLDDLSHH SPSPRPATPP QAAAMSPSPP PPHRGGLFSS TPLRSNGSPS
101: PAAWWSSSRE EMAREGSPVD GVVQPQQQPS PTTASGQQSQ QQKVTLITLP PPREVARPEM PKDSTPSAGR VDEEEWVTVF GFLPGDTNLV LREFEKCGIV
201: LRHVPGPRDA NWMHILYQSR HDAQKALTKH GQQLNSVLII GVKQVDPWQR QYLNEKTNEN FQVGATDPFP SQHVAPSSFT TRNALAPLPS NSMPNGIGNG
301: SGRGASGAIA SPTKSVLSKV MDLMFGL
101: PAAWWSSSRE EMAREGSPVD GVVQPQQQPS PTTASGQQSQ QQKVTLITLP PPREVARPEM PKDSTPSAGR VDEEEWVTVF GFLPGDTNLV LREFEKCGIV
201: LRHVPGPRDA NWMHILYQSR HDAQKALTKH GQQLNSVLII GVKQVDPWQR QYLNEKTNEN FQVGATDPFP SQHVAPSSFT TRNALAPLPS NSMPNGIGNG
301: SGRGASGAIA SPTKSVLSKV MDLMFGL
001: MSAAAHRTPK SGRQSLLFQD LASPVSARRG KFSSPGQAAA VSALWRENFG GSDLPPPPMY TLDDRSDFSP ESGIADYSAS PDAKSDRRTP FQSSGKNIVT
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
Arabidopsis Description
NUP35Nuclear pore complex protein NUP35 [Source:UniProtKB/Swiss-Prot;Acc:O04326]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.