Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027174.1-P | Field mustard | plastid | 89.36 | 88.02 |
| VIT_09s0002g03770.t01 | Wine grape | mitochondrion, plastid | 71.43 | 74.13 |
| KRH23409 | Soybean | mitochondrion | 72.04 | 71.6 |
| KRH09922 | Soybean | endoplasmic reticulum, nucleus | 72.04 | 71.6 |
| CDY30157 | Canola | plastid | 88.75 | 68.87 |
| PGSC0003DMT400006495 | Potato | mitochondrion, plastid | 65.96 | 64.78 |
| GSMUA_Achr6P14800_001 | Banana | plastid | 37.08 | 53.98 |
| CDX97739 | Canola | plastid | 89.06 | 43.93 |
| HORVU3Hr1G026980.2 | Barley | nucleus, plastid | 41.34 | 43.73 |
| GSMUA_Achr4P15460_001 | Banana | mitochondrion, plastid | 47.42 | 43.58 |
| TraesCS3A01G313000.1 | Wheat | nucleus | 42.25 | 43.44 |
| TraesCS3B01G158900.1 | Wheat | nucleus | 41.95 | 43.12 |
| Solyc03g120880.2.1 | Tomato | nucleus | 65.65 | 43.03 |
| TraesCS3D01G141300.1 | Wheat | nucleus | 41.34 | 42.77 |
| Os01t0200500-01 | Rice | nucleus | 41.95 | 42.2 |
| Zm00001d008871_P001 | Maize | mitochondrion | 41.03 | 41.93 |
| EES02290 | Sorghum | nucleus, plastid | 40.73 | 41.61 |
| GSMUA_Achr4P08270_001 | Banana | mitochondrion | 35.87 | 41.4 |
| HORVU1Hr1G076010.1 | Barley | plastid | 34.65 | 34.44 |
| EES19830 | Sorghum | mitochondrion | 33.43 | 33.74 |
| TraesCS1D01G342600.1 | Wheat | plastid | 34.35 | 33.24 |
| Os05t0520100-00 | Rice | mitochondrion | 33.13 | 32.93 |
| HORVU3Hr1G071060.1 | Barley | plastid | 31.0 | 32.69 |
| TraesCS3B01G308400.1 | Wheat | plastid | 31.0 | 32.38 |
| Zm00001d038803_P001 | Maize | mitochondrion | 31.31 | 31.99 |
| TraesCS3D01G274500.1 | Wheat | plastid | 30.4 | 31.75 |
| TraesCS3A01G274800.1 | Wheat | plastid | 30.09 | 31.63 |
| Zm00001d010783_P001 | Maize | plastid | 33.13 | 31.5 |
| TraesCS1A01G340600.1 | Wheat | plastid | 31.0 | 30.18 |
Protein Annotations
| MapMan:23.5.1.1.6.5 | Gene3D:3.30.70.330 | EntrezGene:820878 | UniProt:A0A178V9K0 | ProteinID:AAB63646.1 | ProteinID:AEE75796.1 |
| ArrayExpress:AT3G16310 | EnsemblPlantsGene:AT3G16310 | RefSeq:AT3G16310 | TAIR:AT3G16310 | RefSeq:AT3G16310-TAIR-G | EnsemblPlants:AT3G16310.1 |
| TAIR:AT3G16310.1 | EMBL:AY070444 | EMBL:AY086937 | ProteinID:BAB01270.1 | EMBL:BT002339 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003697 | GO:GO:0005215 | GO:GO:0005487 | GO:GO:0005488 |
| GO:GO:0005543 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 |
| GO:GO:0005643 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006607 | GO:GO:0006810 | GO:GO:0006913 |
| GO:GO:0006999 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0031965 | GO:GO:0044613 | GO:GO:0044615 |
| GO:GO:0051028 | InterPro:IPR007846 | InterPro:IPR012677 | RefSeq:NP_566542.1 | InterPro:Nucleoporin_NUP53 | InterPro:Nucleotide-bd_a/b_plait_sf |
| UniProt:O04326 | ProteinID:OAP01673.1 | PFAM:PF05172 | PIRSF:PIRSF038119 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PFscan:PS51472 | PANTHER:PTHR21527 | InterPro:RBD_domain_sf | InterPro:RRM_NUP35_dom |
| SUPFAM:SSF54928 | UniParc:UPI00000AC1A7 | SEG:seg | : | : | : |
Description
NUP35Nuclear pore complex protein NUP35 [Source:UniProtKB/Swiss-Prot;Acc:O04326]
Coordinates
chr3:-:5526249..5528602
Molecular Weight (calculated)
35431.8 Da
IEP (calculated)
10.059
GRAVY (calculated)
-0.539
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAAAHRTPK SGRQSLLFQD LASPVSARRG KFSSPGQAAA VSALWRENFG GSDLPPPPMY TLDDRSDFSP ESGIADYSAS PDAKSDRRTP FQSSGKNIVT
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.