Factsheet for Bra027174.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000340.1-P
Bra002190.1-P
Bra004803.1-P
Bra005603.1-P
Bra006482.1-P
Bra008874.1-P
Bra011548.1-P
Bra013118.1-P
Bra016620.1-P
Bra017667.1-P
Bra019657.1-P
Bra021076.1-P
Bra022660.1-P
Bra022748.1-P
Bra024795.1-P
Bra026570.1-P
Bra026690.1-P
Bra026782.1-P
Bra026997.1-P
Bra027009.1-P
Bra027498.1-P
Bra027622.1-P
Bra029689.1-P
Bra030565.1-P
Bra030605.1-P
Bra030853.1-P
Bra032137.1-P
Bra032886.1-P
Bra033173.1-P
Bra034641.1-P
Bra037108.1-P
Bra037667.1-P
Bra038380.1-P
Bra039259.1-P
Bra039822.1-P
Bra040042.1-P
Bra040984.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16310.1	Bra030565.1-P	AT1G04340.1	21798944
AT3G16310.1	Bra019657.1-P	AT1G14360.1	21798944
AT3G16310.1	Bra026782.1-P	AT1G15080.1	21798944
AT3G16310.1	Bra016620.1-P	AT1G17080.1	21798944
AT3G16310.1	Bra026690.1-P	AT1G17080.1	21798944
AT3G16310.1	Bra040984.1-P	AT1G17080.1	21798944
AT3G16310.1	Bra032886.1-P	AT1G28250.1	21798944
AT3G16310.1	Bra030853.1-P	AT1G55535.1	21798944
AT3G16310.1	Bra037108.1-P	AT1G55535.1	21798944
AT3G16310.1	Bra027009.1-P	AT1G62880.1	21798944
AT3G16310.1	Bra039259.1-P	AT1G62880.1	21798944
AT3G16310.1	Bra026997.1-P	AT1G63120.1	21798944
AT3G16310.1	Bra027622.1-P	AT1G63120.1	21798944
AT3G16310.1	Bra024795.1-P	AT2G02990.1	21798944
AT3G16310.1	Bra026570.1-P	AT2G02990.1	21798944
AT3G16310.1	Bra013118.1-P	AT2G14835.2	21798944
AT3G16310.1	Bra039822.1-P	AT2G14835.2	21798944
AT3G16310.1	Bra032137.1-P	AT2G23910.1	21798944
AT3G16310.1	Bra030605.1-P	AT2G32380.1	21798944
AT3G16310.1	Bra005603.1-P	AT2G32580.1	21798944
AT3G16310.1	Bra000340.1-P	AT2G44080.1	21798944
AT3G16310.1	Bra004803.1-P	AT2G44080.1	21798944
AT3G16310.1	Bra037667.1-P	AT2G44080.1	21798944
AT3G16310.1	Bra029689.1-P	AT3G07950.1	21798944
AT3G16310.1	Bra040042.1-P	AT3G07950.1	21798944
AT3G16310.1	Bra038380.1-P	AT4G09580.1	21798944
AT3G16310.1	Bra033173.1-P	AT4G10430.1	21798944
AT3G16310.1	Bra021076.1-P	AT4G16840.1	21798944
AT3G16310.1	Bra011548.1-P	AT4G34640.1	21798944
AT3G16310.1	Bra017667.1-P	AT4G34640.1	21798944
AT3G16310.1	Bra034641.1-P	AT4G34640.1	21798944
AT3G16310.1	Bra008874.1-P	AT5G12880.1	21798944
AT3G16310.1	Bra002190.1-P	AT5G18850.1	21798944
AT3G16310.1	Bra006482.1-P	AT5G18850.1	21798944
AT3G16310.1	Bra027498.1-P	AT5G43460.1	21798944
AT3G16310.1	Bra022748.1-P	AT5G51010.1	21798944
AT3G16310.1	Bra022660.1-P	AT5G53560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G16310.1	Thale cress	plastid	88.02	89.36
CDY30157	Canola	plastid	97.6	76.89
VIT_09s0002g03770.t01	Wine grape	mitochondrion, plastid	68.26	71.92
KRH09922	Soybean	endoplasmic reticulum, nucleus	67.66	68.28
KRH23409	Soybean	mitochondrion	67.37	67.98
PGSC0003DMT400006495	Potato	mitochondrion, plastid	65.27	65.07
GSMUA_Achr6P14800_001	Banana	plastid	34.73	51.33
CDX97739	Canola	plastid	98.8	49.48
HORVU3Hr1G026980.2	Barley	nucleus, plastid	41.92	45.02
TraesCS3A01G313000.1	Wheat	nucleus	42.81	44.69
GSMUA_Achr4P15460_001	Banana	mitochondrion, plastid	47.6	44.41
TraesCS3B01G158900.1	Wheat	nucleus	42.52	44.38
TraesCS3D01G141300.1	Wheat	nucleus	41.92	44.03
Solyc03g120880.2.1	Tomato	nucleus	64.97	43.23
Os01t0200500-01	Rice	nucleus	41.92	42.81
EES02290	Sorghum	nucleus, plastid	41.02	42.55
GSMUA_Achr4P08270_001	Banana	mitochondrion	36.23	42.46
Zm00001d008871_P001	Maize	mitochondrion	40.72	42.24
HORVU1Hr1G076010.1	Barley	plastid	34.13	34.44
EES19830	Sorghum	mitochondrion	32.93	33.74
TraesCS1D01G342600.1	Wheat	plastid	33.83	33.24
Os05t0520100-00	Rice	mitochondrion	32.63	32.93
TraesCS3B01G308400.1	Wheat	plastid	30.54	32.38
HORVU3Hr1G071060.1	Barley	plastid	29.94	32.05
Zm00001d038803_P001	Maize	mitochondrion	30.54	31.68
TraesCS3D01G274500.1	Wheat	plastid	29.64	31.43
TraesCS3A01G274800.1	Wheat	plastid	29.34	31.31
Zm00001d010783_P001	Maize	plastid	32.34	31.21
TraesCS1A01G340600.1	Wheat	plastid	30.24	29.88

Protein Annotations

MapMan:23.5.1.1.6.5	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra027174	EnsemblPlants:Bra027174.1	EnsemblPlants:Bra027174.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005635	GO:GO:0005643	GO:GO:0006810	GO:GO:0006913	GO:GO:0008150	GO:GO:0015031
GO:GO:0016020	GO:GO:0031965	GO:GO:0051028	InterPro:IPR007846	InterPro:IPR012677	UniProt:M4EEG2
InterPro:Nucleoporin_NUP53	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF05172	PIRSF:PIRSF038119	PFscan:PS51472	PANTHER:PTHR21527
InterPro:RBD_domain_sf	InterPro:RRM_NUP35_dom	SUPFAM:SSF54928	UniParc:UPI0002547834	SEG:seg	:

Description

AT3G16310 (E=6e-144) | mitotic phosphoprotein N' end (MPPN) family protein

Coordinates

chrA05:+:19534025..19535770

Molecular Weight (calculated)

35940.4 Da

IEP (calculated)

9.946

GRAVY (calculated)

-0.544

Length

334 amino acids

Sequence
(BLAST)

001: MSAHRTPKTG RQSLLFQDLA SPVSARRGKF STPGQAAAVS ALWRENLGGS DLPPPPMYTL DDRSDFSPES GIADYSASPD VKSERRTPFQ SSGKNVVTPG
101: KGKLEASPSF SLLSGQQQSQ QVSGSPSWWS QSKGGGSSAE QEDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQVIPT GNVQEEEWVT VYGFPPSDTN
201: LVLREFEKCG MIVKHVPGPR NANWMHILYQ NRSDAQKALS KTGMMINGVV IVGVKPVDPI QRQALNERLN NQGFMPLPPP SSTRDTEFNA ARGASSRPHY
301: LQNGSAFSPQ PNGGAMAVPS KSMVSKFVDL MFGV

Best Arabidopsis Sequence Match ( AT3G16310.1 )
(BLAST)

001: MSAAAHRTPK SGRQSLLFQD LASPVSARRG KFSSPGQAAA VSALWRENFG GSDLPPPPMY TLDDRSDFSP ESGIADYSAS PDAKSDRRTP FQSSGKNIVT
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV

Arabidopsis Description

NUP35Nuclear pore complex protein NUP35 [Source:UniProtKB/Swiss-Prot;Acc:O04326]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.