Factsheet for Bra033173.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
peroxisome 2
mitochondrion 2
plastid 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012567.1-P
Bra013361.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10430.1	Bra012567.1-P	AT4G19030.1	21798944
AT4G10430.1	Bra013361.1-P	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94258	Canola	cytosol, peroxisome, plasma membrane	98.27	97.42
AT4G10430.1	Thale cress	cytosol, peroxisome, plasma membrane	89.31	89.05
Bra036730.1-P	Field mustard	cytosol, peroxisome, plasma membrane	80.06	86.02
Bra040009.1-P	Field mustard	cytosol, peroxisome, plasma membrane	86.13	85.88
VIT_02s0025g03210.t01	Wine grape	cytosol, peroxisome, plasma membrane	74.86	71.75
KRH36308	Soybean	cytosol, peroxisome, plasma membrane	73.12	71.47
KRG93048	Soybean	cytosol, peroxisome, plasma membrane	73.12	71.47
Solyc03g096810.2.1	Tomato	nucleus	69.36	64.69
PGSC0003DMT400001473	Potato	cytosol, peroxisome, plasma membrane	68.79	64.15
Os08t0152800-00	Rice	peroxisome	64.16	61.67
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	65.32	61.41
Os02t0106800-01	Rice	plasma membrane	62.72	61.3
Zm00001d024602_P001	Maize	plasma membrane	65.03	61.14
EES14557	Sorghum	peroxisome	65.61	61.02
HORVU7Hr1G071960.1	Barley	nucleus, peroxisome, plasma membrane	63.58	60.61
EES04336	Sorghum	cytosol	61.85	60.45
TraesCS6D01G028000.1	Wheat	nucleus, peroxisome, plasma membrane	63.01	60.22
TraesCS6A01G024600.1	Wheat	nucleus, peroxisome, plasma membrane	62.72	59.94
TraesCS7D01G298800.1	Wheat	nucleus, peroxisome, plasma membrane	63.01	59.73
Zm00001d049571_P001	Maize	peroxisome	64.16	59.68
TraesCS7A01G303400.1	Wheat	nucleus, peroxisome, plasma membrane	62.72	59.45
TraesCS7B01G203600.1	Wheat	nucleus, peroxisome, plasma membrane	62.72	59.45
GSMUA_Achr2P17850_001	Banana	plasma membrane	67.05	56.31
HORVU6Hr1G004260.1	Barley	cytosol	58.96	55.28
Zm00001d014951_P002	Maize	cytosol	54.62	52.5
GSMUA_AchrUn_...	Banana	cytosol	13.58	43.12

Protein Annotations

EnsemblPlants:Bra033173.1	EnsemblPlants:Bra033173.1-P	EnsemblPlantsGene:Bra033173	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:TMPIT	PANTHER:PTHR21433	PANTHER:PTHR21433:SF0	PFAM:PF07851	SEG:seg	TMHMM:TMhelix
UniParc:UPI00025455D4	UniProt:M4EWI9	MapMan:35.2	:	:	:

Description

AT4G10430 (E=5e-151) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TMPIT-like (InterPro:IPR012926); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33230.1); Has 196 Blast hits to 196 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

Coordinates

chrA02:+:17230851..17233535

Molecular Weight (calculated)

39467.6 Da

IEP (calculated)

9.815

GRAVY (calculated)

0.012

Length

346 amino acids

Sequence
(BLAST)

001: MEVEEEVKRM VEEVKELHDS AASFISSSSH QELTLRQKAS SVDASLRRLH STLASDKSLD PKLEEDLHRA RCMLADGDLS SFLPSKPQGR FVRMFLGPVN
101: VRASRKDIQL KVKEEYNSYR DKTALLFLFF PAALMILRSF YWDGCLPAFP VQLYEAWLLF LYAGLAMREN VLRANGSDIR PWWLYHHYCA MGMALVSLTW
201: EIKGQPNCVQ KQRGVHLFLQ WAMMQGVAML LQNRYQRQRL YTRIALGKAK RMDVVWGETA GVDGQLWLLC PILFILQGFQ AYVGVLLLRA ALTGVVAEWQ
301: VMVCGILLVV MAVGNFINTV ETLMAKSRVK AKMKKSKSRA ELNHTS

Best Arabidopsis Sequence Match ( AT4G10430.1 )
(BLAST)

001: MEVEEEVKQI IDEVKELHDS AASFISSSSQ QELSLRQKAS AVDSSIRRLH STIVSNKNLD PKLVEKLEED LHRARCMLVD GETSSFLPSK PQGRFVRMFC
101: GPVNVRALRK DVQLKVKEEY NRYRDKTALL FLFFPATLLI LRSYYWGGCL PAFPVQLYEA WLLFLYAGLA MRENILRANG SDIRPWWLYH HYCAMAMALV
201: SLTWEIKGQP NCVQKQRGVH LFLQWAMMQG VAMLLQNRYQ RQRLYTRIAL GKAKRMDVVW GETAGVDGQL WLLCPILFIL QVFEAYVGLL LLRKTVTGVV
301: NEWQVMVCGI LLVVMAVGNF INTVETLMAK SRVKAKMKRS KSRAELN

Arabidopsis Description

TMPIT-like protein [Source:UniProtKB/TrEMBL;Acc:Q93XX0]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.