Factsheet for GSMUA_AchrUn_randomP05090_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
peroxisome 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P10230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10430.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P17850_001	Banana	plasma membrane	86.14	76.94
CDY70518	Canola	endoplasmic reticulum, golgi, plasma membrane	51.36	75.6
CDY62149	Canola	extracellular, golgi	33.97	72.67
CDY70882	Canola	mitochondrion	24.18	71.77
CDY62148	Canola	plasma membrane	57.34	71.53
KRG93048	Soybean	cytosol, peroxisome, plasma membrane	67.93	70.62
VIT_02s0025g03210.t01	Wine grape	cytosol, peroxisome, plasma membrane	69.02	70.36
KRH36308	Soybean	cytosol, peroxisome, plasma membrane	67.66	70.34
Bra036730.1-P	Field mustard	cytosol, peroxisome, plasma membrane	60.33	68.94
TraesCS7D01G298800.1	Wheat	nucleus, peroxisome, plasma membrane	68.21	68.77
Os08t0152800-00	Rice	peroxisome	67.12	68.61
HORVU7Hr1G071960.1	Barley	nucleus, peroxisome, plasma membrane	67.66	68.59
TraesCS7A01G303400.1	Wheat	nucleus, peroxisome, plasma membrane	67.93	68.49
TraesCS7B01G203600.1	Wheat	nucleus, peroxisome, plasma membrane	67.93	68.49
CDX85978	Canola	cytosol, peroxisome, plasma membrane	60.33	67.89
EES14557	Sorghum	peroxisome	68.48	67.74
EES04336	Sorghum	cytosol	64.95	67.51
TraesCS6A01G024600.1	Wheat	nucleus, peroxisome, plasma membrane	65.49	66.57
Zm00001d024602_P001	Maize	plasma membrane	66.3	66.3
Zm00001d049571_P001	Maize	peroxisome	66.85	66.13
Solyc03g096810.2.1	Tomato	nucleus	66.58	66.04
TraesCS6D01G028000.1	Wheat	nucleus, peroxisome, plasma membrane	64.95	66.02
Os02t0106800-01	Rice	plasma membrane	63.32	65.82
PGSC0003DMT400001473	Potato	cytosol, peroxisome, plasma membrane	66.3	65.77
AT4G10430.1	Thale cress	cytosol, peroxisome, plasma membrane	61.96	65.71
Bra040009.1-P	Field mustard	cytosol, peroxisome, plasma membrane	61.68	65.42
Bra033173.1-P	Field mustard	cytosol, peroxisome, plasma membrane	61.41	65.32
CDY44965	Canola	cytosol, peroxisome, plasma membrane	62.5	64.79
CDX94258	Canola	cytosol, peroxisome, plasma membrane	61.41	64.76
CDX93786	Canola	cytosol, peroxisome, plasma membrane	51.9	64.75
Zm00001d014951_P002	Maize	cytosol	59.24	60.56
HORVU6Hr1G004260.1	Barley	cytosol	59.51	59.35
AT1G33230.2	Thale cress	plastid	57.07	59.32
GSMUA_AchrUn_...	Banana	cytosol	13.86	46.79
CDY25256	Canola	cytosol, nucleus, plastid	23.37	41.55

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP05090_001	EnsemblPlants:GSMUA_AchrUn_randomT05090_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG05090_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:TMPIT	ncoils:Coil	PANTHER:PTHR21433	PANTHER:PTHR21433:SF4	PFAM:PF07851	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002966815	UniProt:M0U6H1	MapMan:35.2	:	:

Description

transmembrane protein 120A, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG05090_001]

Coordinates

chrchrUn_random:+:19903629..19920180

Molecular Weight (calculated)

41815.6 Da

IEP (calculated)

9.878

GRAVY (calculated)

0.083

Length

368 amino acids

Sequence
(BLAST)

001: MVDPNAIMEE AARLAEAARE LDDAAAALIS RTWNEEQSLR QRALALESDL RRLQSSLDSA AKKKGAIDSK IAEKVDEELY RVRCVINDGD VASLLPSKAH
101: GRFLKMFLGP VNVRATRKEV QLKVKEEYNS YRDRTAFLFL IFPSTLLLLR SWVWDGCLPA LPVQLYQVWL LYLYTTLALR ENILSVNGSD IRPWWIYHHY
201: CAMLMALISL TWEIRRQPDC AYKQRGVQLF LVWAMMQGVA MLLQNRYQRQ RLYTRIALGK AKRMDVVWGE TAGVEGQLLL LCPILFILQG FEAFIGLLLL
301: RTAFVGVIVC GILLVLMAIG NFANTMQTLI AKSRFKAKMK RTRSKQDIDQ CISSVDPSLM GSKSSKAS

Best Arabidopsis Sequence Match ( AT4G10430.1 )
(BLAST)

001: MEVEEEVKQI IDEVKELHDS AASFISSSSQ QELSLRQKAS AVDSSIRRLH STIVSNKNLD PKLVEKLEED LHRARCMLVD GETSSFLPSK PQGRFVRMFC
101: GPVNVRALRK DVQLKVKEEY NRYRDKTALL FLFFPATLLI LRSYYWGGCL PAFPVQLYEA WLLFLYAGLA MRENILRANG SDIRPWWLYH HYCAMAMALV
201: SLTWEIKGQP NCVQKQRGVH LFLQWAMMQG VAMLLQNRYQ RQRLYTRIAL GKAKRMDVVW GETAGVDGQL WLLCPILFIL QVFEAYVGLL LLRKTVTGVV
301: NEWQVMVCGI LLVVMAVGNF INTVETLMAK SRVKAKMKRS KSRAELN

Arabidopsis Description

TMPIT-like protein [Source:UniProtKB/TrEMBL;Acc:Q93XX0]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.