Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70882 | Canola | mitochondrion | 62.21 | 86.29 |
| CDY70518 | Canola | endoplasmic reticulum, golgi, plasma membrane | 93.02 | 64.0 |
| CDY62148 | Canola | plasma membrane | 95.35 | 55.59 |
| CDX85978 | Canola | cytosol, peroxisome, plasma membrane | 93.02 | 48.93 |
| CDY44965 | Canola | cytosol, peroxisome, plasma membrane | 95.93 | 46.48 |
| AT1G33230.2 | Thale cress | plastid | 90.12 | 43.79 |
| CDX94258 | Canola | cytosol, peroxisome, plasma membrane | 84.3 | 41.55 |
| KRG93048 | Soybean | cytosol, peroxisome, plasma membrane | 80.81 | 39.27 |
| VIT_02s0025g03210.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 81.98 | 39.06 |
| KRH36308 | Soybean | cytosol, peroxisome, plasma membrane | 80.23 | 38.98 |
| Os02t0106800-01 | Rice | plasma membrane | 73.26 | 35.59 |
| HORVU7Hr1G071960.1 | Barley | nucleus, peroxisome, plasma membrane | 74.42 | 35.26 |
| Zm00001d024602_P001 | Maize | plasma membrane | 75.0 | 35.05 |
| EES14557 | Sorghum | peroxisome | 75.0 | 34.68 |
| TraesCS6D01G028000.1 | Wheat | nucleus, peroxisome, plasma membrane | 72.67 | 34.53 |
| TraesCS7D01G298800.1 | Wheat | nucleus, peroxisome, plasma membrane | 73.26 | 34.52 |
| TraesCS7B01G203600.1 | Wheat | nucleus, peroxisome, plasma membrane | 73.26 | 34.52 |
| TraesCS7A01G303400.1 | Wheat | nucleus, peroxisome, plasma membrane | 73.26 | 34.52 |
| TraesCS6A01G024600.1 | Wheat | nucleus, peroxisome, plasma membrane | 72.09 | 34.25 |
| Os08t0152800-00 | Rice | peroxisome | 71.51 | 34.17 |
| GSMUA_AchrUn_... | Banana | cytosol, peroxisome, plasma membrane | 72.67 | 33.97 |
| PGSC0003DMT400001473 | Potato | cytosol, peroxisome, plasma membrane | 73.26 | 33.96 |
| Solyc03g096810.2.1 | Tomato | nucleus | 73.26 | 33.96 |
| CDX93786 | Canola | cytosol, peroxisome, plasma membrane | 58.14 | 33.9 |
| Zm00001d049571_P001 | Maize | peroxisome | 73.26 | 33.87 |
| EES04336 | Sorghum | cytosol | 69.19 | 33.62 |
| HORVU6Hr1G004260.1 | Barley | cytosol | 72.09 | 33.6 |
| GSMUA_Achr2P17850_001 | Banana | plasma membrane | 75.0 | 31.31 |
| Zm00001d014951_P002 | Maize | cytosol | 55.23 | 26.39 |
| CDY25256 | Canola | cytosol, nucleus, plastid | 9.88 | 8.21 |
| GSMUA_AchrUn_... | Banana | cytosol | 2.91 | 4.59 |
Protein Annotations
| EnsemblPlants:CDY62149 | EnsemblPlantsGene:GSBRNA2T00036003001 | GO:A0A078JA87 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:TMPIT | PANTHER:PTHR21433 | PANTHER:PTHR21433:SF4 | PFAM:PF07851 | ProteinID:CDY62149 | ProteinID:CDY62149.1 |
| TMHMM:TMhelix | UniParc:UPI0004EEB5FC | UniProt:A0A078JA87 | MapMan:35.2 | : | : |
Description
BnaCnng39370DBnaCnng39370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JA87]
Coordinates
chrLK034105:+:17749..20524
Molecular Weight (calculated)
19648.9 Da
IEP (calculated)
10.239
GRAVY (calculated)
0.376
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAERCIFVF LWLYHHYCAM AMALVSLTWE IKGQPNCVQK QKGVRLFLQW AMMQGVAMLL QNRYQRQRLY TRIALGKAKR MDVVWGETAG VDGQLLLLCP
101: ILFTLQGFEA YVGLQLLRTA LTGVVGEWQV LICGILLVVM AIGNFINTVE TLMVKSRFKA KMKRSKSRAE LD
101: ILFTLQGFEA YVGLQLLRTA LTGVVGEWQV LICGILLVVM AIGNFINTVE TLMVKSRFKA KMKRSKSRAE LD
001: MEEVEEEVRR IVEQVKELHD SSTSFVSSSS QEELSLRNRA SVVDSSIRRL HSTLASDKHL DPKLFEKLEE DLQRARCMLA DGDTSSFLPS KPQGRFVRMF
101: LGPVNVRASR KDIQLKVKEE YNSYRDRTAL LFLVFPAILL TLRSYVWDGC LPAFPVQLYQ AWLLFLYAGL VMRENILRAN GSDIRSWWLY HHYFAMAMSL
201: VSLTWEIKGQ PNCVQKQKGV RLFLQWAMMQ GVAMLLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVDGQ LLLLFPILFT LQGFEAYVGF QLLRTVLMGV
301: VAEWQVLVCG ILLVVMAIGN FINTVETLMV KSRFKAKMKR SKSRAEL
101: LGPVNVRASR KDIQLKVKEE YNSYRDRTAL LFLVFPAILL TLRSYVWDGC LPAFPVQLYQ AWLLFLYAGL VMRENILRAN GSDIRSWWLY HHYFAMAMSL
201: VSLTWEIKGQ PNCVQKQKGV RLFLQWAMMQ GVAMLLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVDGQ LLLLFPILFT LQGFEAYVGF QLLRTVLMGV
301: VAEWQVLVCG ILLVVMAIGN FINTVETLMV KSRFKAKMKR SKSRAEL
Arabidopsis Description
TMPIT-like protein [Source:TAIR;Acc:AT1G33230]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.