Factsheet for Os02t0106800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
peroxisome 2
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04336	Sorghum	cytosol	86.16	86.16
TraesCS6A01G024600.1	Wheat	nucleus, peroxisome, plasma membrane	85.88	83.98
TraesCS6D01G028000.1	Wheat	nucleus, peroxisome, plasma membrane	85.59	83.7
Zm00001d014951_P002	Maize	cytosol	76.84	75.56
HORVU6Hr1G004260.1	Barley	cytosol	77.97	74.8
CDY70882	Canola	mitochondrion	25.71	73.39
CDY62149	Canola	extracellular, golgi	35.59	73.26
CDY70518	Canola	endoplasmic reticulum, golgi, plasma membrane	51.13	72.4
CDY62148	Canola	plasma membrane	55.65	66.78
Bra036730.1-P	Field mustard	cytosol, peroxisome, plasma membrane	58.47	64.29
Os08t0152800-00	Rice	peroxisome	65.25	64.17
CDX85978	Canola	cytosol, peroxisome, plasma membrane	59.04	63.91
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	65.82	63.32
Bra033173.1-P	Field mustard	cytosol, peroxisome, plasma membrane	61.3	62.72
Bra040009.1-P	Field mustard	cytosol, peroxisome, plasma membrane	61.3	62.54
KRH36308	Soybean	cytosol, peroxisome, plasma membrane	62.43	62.43
VIT_02s0025g03210.t01	Wine grape	cytosol, peroxisome, plasma membrane	63.56	62.33
KRG93048	Soybean	cytosol, peroxisome, plasma membrane	61.86	61.86
CDX94258	Canola	cytosol, peroxisome, plasma membrane	60.73	61.6
CDY44965	Canola	cytosol, peroxisome, plasma membrane	61.3	61.13
AT4G10430.1	Thale cress	cytosol, peroxisome, plasma membrane	59.89	61.1
Solyc03g096810.2.1	Tomato	nucleus	63.56	60.65
PGSC0003DMT400001473	Potato	cytosol, peroxisome, plasma membrane	63.28	60.38
GSMUA_Achr2P17850_001	Banana	plasma membrane	67.23	57.77
AT1G33230.2	Thale cress	plastid	57.63	57.63
CDX93786	Canola	cytosol, peroxisome, plasma membrane	47.74	57.29
CDY25256	Canola	cytosol, nucleus, plastid	21.19	36.23

Protein Annotations

EnsemblPlants:Os02t0106800-01	EnsemblPlantsGene:Os02g0106800	EntrezGene:4328022	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:TMPIT	ncoils:Coil	PANTHER:PTHR21433	PANTHER:PTHR21433:SF4	PFAM:PF07851	ProteinID:BAD28092.1
ProteinID:BAF07544.1	ProteinID:BAS76571.1	ProteinID:EEE56148.1	RefSeq:XP_015627093.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI00003CE5EE	UniProt:Q6ETC8	MapMan:35.2	:	:	:

Description

TMPIT-like family protein. (Os02t0106800-01)

Coordinates

chr2:+:397365..403411

Molecular Weight (calculated)

40258.4 Da

IEP (calculated)

10.273

GRAVY (calculated)

0.005

Length

354 amino acids

Sequence
(BLAST)

001: MATDGDALES QAAAAAEAAR ELREAAASLV ARRSADEDAL RRRATALDAD LRRLQASLST LAPTTLDKVE EELERARVTI SDSDVAAFLP SKRNGKFLKT
101: FVGPVNVRVA RKEDKLRVKD EYNNYRDRAA YMFLLFPSIL LLLRWWIWDG CLPALAVQMY QAWLLFLYTS FALRENVLIV NGSDIRPWWI YHHYLAMLMA
201: LVSLTWEIKG QPDCSSKQRG VQLFLRWAIM QGIAMHLQNR YQRQRLRTRI ALGKAKRMDV VAGETAGVEG QLLLLYPVLF TLQVFEGYVG VLLLKTALHG
301: LASEWQVVVC GILLVVMAVG NFVNTMETLM LKLRFKAKMK RAKSRQDLSR QHQN

Best Arabidopsis Sequence Match ( AT1G33230.1 )
(BLAST)

001: MEEVEEEVRR IVEQVKELHD SSTSFVSSSS QEELSLRNRA SVVDSSIRRL HSTLASDKHL DPKLFEKLEE DLQRARCMLA DGDTSSFLPS KPQGRFVRMF
101: LGPVNVRASR KDIQLKVKEE YNSYRDRTAL LFLVFPAILL TLRSYVWDGC LPAFPVQLYQ AWLLFLYAGL VMRENILRAN GSDIRSWWLY HHYFAMAMSL
201: VSLTWEIKGQ PNCVQKQKGV RLFLQWAMMQ GVAMLLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVDGQ LLLLFPILFT LQGFEAYVGF QLLRTVLMGV
301: VAEWQVLVCG ILLVVMAIGN FINTVETLMV KSRFKAKMKR SKSRAEL

Arabidopsis Description

TMPIT-like protein [Source:TAIR;Acc:AT1G33230]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.