CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
peroxisome 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0106800-01	Rice	plasma membrane	86.16	86.16
Zm00001d014951_P002	Maize	cytosol	85.59	84.17
TraesCS6A01G024600.1	Wheat	nucleus, peroxisome, plasma membrane	84.75	82.87
TraesCS6D01G028000.1	Wheat	nucleus, peroxisome, plasma membrane	84.46	82.6
HORVU6Hr1G004260.1	Barley	cytosol	76.55	73.44
CDY70882	Canola	mitochondrion	25.14	71.77
CDY70518	Canola	endoplasmic reticulum, golgi, plasma membrane	50.0	70.8
CDY62149	Canola	extracellular, golgi	33.62	69.19
CDY62148	Canola	plasma membrane	54.8	65.76
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	67.51	64.95
EES14557	Sorghum	peroxisome	66.38	63.17
Bra036730.1-P	Field mustard	cytosol, peroxisome, plasma membrane	57.34	63.04
CDX85978	Canola	cytosol, peroxisome, plasma membrane	58.19	63.0
Bra033173.1-P	Field mustard	cytosol, peroxisome, plasma membrane	60.45	61.85
Bra040009.1-P	Field mustard	cytosol, peroxisome, plasma membrane	60.17	61.38
VIT_02s0025g03210.t01	Wine grape	cytosol, peroxisome, plasma membrane	62.15	60.94
Solyc03g096810.2.1	Tomato	nucleus	63.84	60.92
PGSC0003DMT400001473	Potato	cytosol, peroxisome, plasma membrane	63.56	60.65
CDX94258	Canola	cytosol, peroxisome, plasma membrane	59.6	60.46
CDY44965	Canola	cytosol, peroxisome, plasma membrane	59.89	59.72
KRH36308	Soybean	cytosol, peroxisome, plasma membrane	59.6	59.6
KRG93048	Soybean	cytosol, peroxisome, plasma membrane	59.6	59.6
AT4G10430.1	Thale cress	cytosol, peroxisome, plasma membrane	58.19	59.37
GSMUA_Achr2P17850_001	Banana	plasma membrane	67.23	57.77
CDX93786	Canola	cytosol, peroxisome, plasma membrane	47.46	56.95
AT1G33230.2	Thale cress	plastid	56.21	56.21
CDY25256	Canola	cytosol, nucleus, plastid	21.19	36.23

Protein Annotations

MapMan:35.2	EntrezGene:8085176	UniProt:C5XRK6	ncoils:Coil	EnsemblPlants:EES04336	ProteinID:EES04336
ProteinID:EES04336.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PFAM:PF07851	PANTHER:PTHR21433
PANTHER:PTHR21433:SF4	EnsemblPlantsGene:SORBI_3004G005200	unigene:Sbi.6778	InterPro:TMPIT	TMHMM:TMhelix	UniParc:UPI0001A8590C
RefSeq:XP_002451360.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:442658..448606

Molecular Weight (calculated)

40095.1 Da

IEP (calculated)

10.214

GRAVY (calculated)

-0.006

Length

354 amino acids

Sequence
(BLAST)

001: MSGDGDARGL EAAASAAAEA ARELREAAAA LVATRAAEED ALRRRAVALD ADVRRLQGSL HALDSSTIDK VEEELERARV AITDSDVASF LPSKRNGKFL
101: KTFLGPVNVR VARKEDKLKI KDEYNNYRDR TAYKFLLFPS ILLLLRWWIW DGCLPALAVQ IYQAWLLYLY TSFALRENVL IANGSDIRPW WIYHHYLAML
201: MALISLTWEI KGQPDCSSKQ RGVQLFLRWA IMQGIAMHLQ NRYQRQRLRT RIALGKAKRM DVVAGETAGV EGQLLLLYPV LFILQGFEAY VGVLLLQTAL
301: HGLASQWQVV VCGILLVVMA VGNFVNTMET LLLKLRFKAK MKRAKNRQDR PHQN

Best Arabidopsis Sequence Match ( AT1G33230.1 )
(BLAST)

001: MEEVEEEVRR IVEQVKELHD SSTSFVSSSS QEELSLRNRA SVVDSSIRRL HSTLASDKHL DPKLFEKLEE DLQRARCMLA DGDTSSFLPS KPQGRFVRMF
101: LGPVNVRASR KDIQLKVKEE YNSYRDRTAL LFLVFPAILL TLRSYVWDGC LPAFPVQLYQ AWLLFLYAGL VMRENILRAN GSDIRSWWLY HHYFAMAMSL
201: VSLTWEIKGQ PNCVQKQKGV RLFLQWAMMQ GVAMLLQNRY QRQRLYTRIA LGKAKRMDVV WGETAGVDGQ LLLLFPILFT LQGFEAYVGF QLLRTVLMGV
301: VAEWQVLVCG ILLVVMAIGN FINTVETLMV KSRFKAKMKR SKSRAEL

Arabidopsis Description

TMPIT-like protein [Source:TAIR;Acc:AT1G33230]
SUBAcon: [cytosol,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.