Factsheet for Solyc03g096810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G10430.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT4G10430.1	Solyc03g005980.2.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001473	Potato	cytosol, peroxisome, plasma membrane	98.65	98.65
CDY70518	Canola	endoplasmic reticulum, golgi, plasma membrane	52.56	78.0
CDY70882	Canola	mitochondrion	25.88	77.42
VIT_02s0025g03210.t01	Wine grape	cytosol, peroxisome, plasma membrane	71.43	73.41
CDY62149	Canola	extracellular, golgi	33.96	73.26
CDY62148	Canola	plasma membrane	57.95	72.88
Bra036730.1-P	Field mustard	cytosol, peroxisome, plasma membrane	62.26	71.74
CDX85978	Canola	cytosol, peroxisome, plasma membrane	61.73	70.03
Bra033173.1-P	Field mustard	cytosol, peroxisome, plasma membrane	64.69	69.36
AT4G10430.1	Thale cress	cytosol, peroxisome, plasma membrane	64.15	68.59
CDX94258	Canola	cytosol, peroxisome, plasma membrane	63.88	67.91
KRH36308	Soybean	cytosol, peroxisome, plasma membrane	64.69	67.8
Bra040009.1-P	Field mustard	cytosol, peroxisome, plasma membrane	63.34	67.72
KRG93048	Soybean	cytosol, peroxisome, plasma membrane	64.42	67.51
CDY44965	Canola	cytosol, peroxisome, plasma membrane	64.42	67.32
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	66.04	66.58
Os08t0152800-00	Rice	peroxisome	63.88	65.83
HORVU7Hr1G071960.1	Barley	nucleus, peroxisome, plasma membrane	63.07	64.46
CDX93786	Canola	cytosol, peroxisome, plasma membrane	51.21	64.41
TraesCS7B01G203600.1	Wheat	nucleus, peroxisome, plasma membrane	63.34	64.38
Zm00001d024602_P001	Maize	plasma membrane	63.61	64.13
TraesCS7D01G298800.1	Wheat	nucleus, peroxisome, plasma membrane	63.07	64.11
EES04336	Sorghum	cytosol	60.92	63.84
TraesCS7A01G303400.1	Wheat	nucleus, peroxisome, plasma membrane	62.53	63.56
Os02t0106800-01	Rice	plasma membrane	60.65	63.56
Zm00001d049571_P001	Maize	peroxisome	63.61	63.44
EES14557	Sorghum	peroxisome	63.07	62.9
TraesCS6A01G024600.1	Wheat	nucleus, peroxisome, plasma membrane	61.19	62.71
AT1G33230.2	Thale cress	plastid	59.57	62.43
TraesCS6D01G028000.1	Wheat	nucleus, peroxisome, plasma membrane	60.65	62.15
GSMUA_Achr2P17850_001	Banana	plasma membrane	67.66	60.92
HORVU6Hr1G004260.1	Barley	cytosol	56.6	56.91
Zm00001d014951_P002	Maize	cytosol	54.45	56.11
CDY25256	Canola	cytosol, nucleus, plastid	22.91	41.06
GSMUA_AchrUn_...	Banana	cytosol	11.32	38.53

Protein Annotations

EnsemblPlants:Solyc03g096810.2.1	EnsemblPlantsGene:Solyc03g096810.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:TMPIT
PANTHER:PTHR21433	PANTHER:PTHR21433:SF4	PFAM:PF07851	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002767DF0
UniProt:K4BJ99	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr3:-:59164633..59169182

Molecular Weight (calculated)

41932.1 Da

IEP (calculated)

10.159

GRAVY (calculated)

-0.126

Length

371 amino acids

Sequence
(BLAST)

001: MGDRDSITTA GGQNSVERDF VEEASRIVEQ AKELQDAASS LISRTTREED SLRQKAKSLD SSVQGLRSAV RKSKLDPNQA EKLEEELFKA SYVLSEGDAA
101: AFLPSKSHGG FLRMFLGPIN VRANRKDVQL KVKEEYNSFR DRTAYLFLLF PSVLLVLRSW MWDGCLPALP VQLYQAWLLY LYTGLALREN ILRANGSDIR
201: PWWIKHHYCA MAMALISLTW EIEREPNCSQ KQRGVQLFLK WAIMQGVAML LQNRYQRQRL YTRIALGKAR RMDVVWGETA GVDGQLLLLF PVLFILQGFE
301: AYVGVLLLKT AFIGVVSEWQ VVTCGILLII MAAGNFANTV KTLVTKSRVK AKMKRGKSKQ DLKSESPAKS S

Best Arabidopsis Sequence Match ( AT4G10430.1 )
(BLAST)

001: MEVEEEVKQI IDEVKELHDS AASFISSSSQ QELSLRQKAS AVDSSIRRLH STIVSNKNLD PKLVEKLEED LHRARCMLVD GETSSFLPSK PQGRFVRMFC
101: GPVNVRALRK DVQLKVKEEY NRYRDKTALL FLFFPATLLI LRSYYWGGCL PAFPVQLYEA WLLFLYAGLA MRENILRANG SDIRPWWLYH HYCAMAMALV
201: SLTWEIKGQP NCVQKQRGVH LFLQWAMMQG VAMLLQNRYQ RQRLYTRIAL GKAKRMDVVW GETAGVDGQL WLLCPILFIL QVFEAYVGLL LLRKTVTGVV
301: NEWQVMVCGI LLVVMAVGNF INTVETLMAK SRVKAKMKRS KSRAELN

Arabidopsis Description

TMPIT-like protein [Source:UniProtKB/TrEMBL;Acc:Q93XX0]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.